BAC Information

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BAC

Clone NameMSMg01-293F01
Chromosome19 (Build37)
Map Location 21,623,928 - 21,624,219
singlet/doubletsinglet
Overlap geneLOC100041633
Upstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
Downstream gene1110059E24Rik, 5730446C15Rik, Tmem2, EG433229, Trpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293F01.T7 (MSMg01no293_f01.b1)MSMg01-293F01.TJ (MSMg01no293_f01.g1)
ACCAG421800AG421801
length736740
length of high quality
(start - end)
614 (45 - 658)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no293_f01.b1 PHD_FILE: MSMg01no293_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:41 2005CHROMAT_FILE: MSMg01no293_f01.g1 PHD_FILE: MSMg01no293_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAATTCTCAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATG
AGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTGCCCATATTTTCGAGGCTTTTCCCCACTT
TATCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGTAGTTCCTTGATC
CACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCGCAT
TCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGAGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAGTTGCTC
TGCAGTAAAGCTTTAGGTCACGCATGGTGATTCTGCCAGAGTTACTTTTG
TCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATGAATAGAGAGGACTCTCATG
TCTAGGGAGGACTCTCATGACTGGGGAGGACTCTCATGAATAGAAAGGAC
TCTCATGTCTAGGGAGGACTCTCATATCTGGGGAGGACTCTCATGAATAA
GGAGGATTCTCTACCTGCTTCTCCTTATGCCCTTGTGTGACCTTTCCCTT
GACTGGGACTGGGAAGTAACCACAGGGCAAGCTTTTCTTTGTATAAGGAA
ATTAACTGTACAGGACCAGGGCTTCATACCTGCAACTTCATTTATTCATA
GTTGCCTCTGTAAAGACCCTATCAAAGTATTGCCACAGCGGGGGCTTGGG
ATTTCAAATGTGAATTTGAGGGAGACATGTGTATTCAATCCATAACAGTC
ATCACAAGAAGTGTGGAGATCTGGAGAGAGACCACACATCCTCTTTATTC
TTCACCTCACAGTGTTTCCTTGGTTTCATAGAAACATCATCTGATCATAG
CCAAGGGTTTTTCCCCACTGATGTCATTTAATGATCACGTAGCAAGCAAG
TTTCTGAATTTCTAGCTTTCCACTCAATGAGAAAAATCCATTTCCCTCTC
TGTGTGTAAGCTTCCAATAGGCAGTTTCACTGAGTCTCATATGCATGCTT
CANGTAACACATCAGATTTGTATTCTAGCTCTGATGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_f01.g1 MSMg01no293_f01.g1 CHROMAT_FILE:
MSMg01no293_f01.g1 PHD_FILE: MSMg01no293_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:41 2005
         (292 letters)



>mm_chr19_21623728_21624419
          Length = 692

 Score =  536 bits (277), Expect = e-157
 Identities = 289/293 (98%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgaatagagaggactctcatgtctagggaggactctcatgactggggaggactctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgaatagagaggactctcatgtctagggaggactctcatgactggggaggactctca 260

                                                                       
Query: 61  tgaatagaaaggactctcatgtctagggaggactctcatatctggggaggactctcatga 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tgaatagaaaggactctcatgtctagggaggattctcatatctggggaggactctcatga 320

                                                                       
Query: 121 ataa-ggaggattctctacctgcttctccttatgcccttgtgtgacctttcccttgactg 179
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 a-aatggaggattctctacctgcttctccttatgcccttgtgtgacctttcccttgactg 379

                                                                       
Query: 180 ggactgggaagtaaccacagggcaagcttttctttgtataaggaaattaactgtacagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggactgggaagtaaccacagggcaagcttttctttgtataaggaaattaactgtacagga 439

                                                                
Query: 240 ccagggcttcatacctgcaacttcatttattcatagttgcctctgtaaagacc 292
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 ccagggcttcatacctgcaacttcatttagtcatagttgcctctgtaaagacc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)