BAC Information

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BAC

Clone NameMSMg01-293O14
Chromosome19 (Build37)
Map Location 9,391,566 - 9,391,881
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2
Downstream geneLOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293O14.T7 (MSMg01no293_o14.b1)MSMg01-293O14.TJ (MSMg01no293_o14.g1)
ACCAG422230AG422231
length737742
length of high quality
(start - end)
320 (34 - 353)289 (63 - 351)
definitionCHROMAT_FILE: MSMg01no293_o14.b1 PHD_FILE: MSMg01no293_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:27 2005CHROMAT_FILE: MSMg01no293_o14.g1 PHD_FILE: MSMg01no293_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGGAA
AGGTGAGCTGCTTTTGAACACACTGATTCTGTAACTACAGAAAAAAAATG
TCTTAGTACCTGAGTCCCAAGACACATCAACACTGGTACAAATTGTCTAA
TATAATAGCCCTAAAACTCAACATTAGTACAGATAGTTAAAGATGCATCT
TTGGTGTGGGTTTGTCCCCTGGGCTTGAGCTACATGGAGAGTGGCATTAC
CATGTAGGAGGTCCCATGGTGACAGCAGCTTTCTTGAAATTTGTGACAGT
TCTTGGATTTGGATATGAGATATTTTAGGGGAAATGGGGAAGATATAAAT
GATACTATTTCACCCCGCCCCCCTAATAATTGTATTTATGAAACTGTTTA
ACTGCCCCCCGAGTTACTTCTCAAACTGCAGCACATGACCAATGAGTATA
CAGCTAGTGAGTCACATAACATGTGTGAAGGATTGTTCTGACCCCTTCAA
TTTGGATCACTTACTTCGTAGTCCTACTGTTAGGAAGAACAGCTCATATA
CCATGAGTTCACTTGAAGTAATGAAAGAAATAAGCATTGCTCCTAAGAAT
GTAGTTGGTATAAACATAATTTGCATCATATTGTACTCTGCTTCATTTAC
AAGAAATCTTCATAAAAAATGTTAAGAAGGAGGTAATTCTCAATTAATGT
GTAGGAAATGAAAGCCAGTGTGAGGTTTAGCTTACGA
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAATATCATCTGTCTTTAATATCTCTCAACATCAACAAA
CTCAATTCCTCAATAAAAAGACAAAAGCTAACAGACTGGATACATAAACA
GGAACCAGCATTTTGCTGCATAGCAGGGGAATACCTCAATAACAAAGACA
GACATTACCTCAGAGCAAAAGGCTGAAAAAAAAGTCTTCAAAGAAAATGG
CCCAAAGAAACAAACTGGTGTTGCTATCTTAATATCCAATAAAATAGACT
TTCAACCAAAAGTGATAAGTGACATGGGGAAGGACACTTCATAGTTATCA
AATTGAATTCCTTCCCGAGACGGAACCCATTCTGAACACCTATGCCCCAA
ATGCAACCCCCCCTACTTAAATAAAAAAAACTTTACGGGGGGGGGGGGCA
CATATTGAACCTCACACAATAATAGTGGGAGACTACTTCAACACCCCGCT
GTCACCAAAGACAGGTCACTGAAACAGAAACTAATTATAGACATAGCGAA
ATTAATAGAGATGATGAATCAAATGGATTTAACAGACATATACAGAACAC
CTCACCTTAAACAAGAGAATACACCTTCTTTTTTAGCACCTCATGACACC
TTCTTCAAAATTGACCACATAATCGGTGATGACCCTTTGTTCTAAAAAGG
CTTTCGAAACCAAAGTTTATATTCCATCTTATTTTCCATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_o14.b1 MSMg01no293_o14.b1 CHROMAT_FILE:
MSMg01no293_o14.b1 PHD_FILE: MSMg01no293_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:27 2005
         (320 letters)



>mm_chr19_9391362_9392081
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtggaaaggtgagctgcttttgaacacactgattctgtaactacagaaaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtggaaaggtgagctgcttttgaacacactgattctgtaactacagaaaaaaa 264

                                                                       
Query: 65  atgtcttagtacctgagtcccaagacacatcaacactggtacaaattgtctaatataata 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtcttagtacctgaatcccaagacacatcaacactggtacaaattgtctaatataata 324

                                                                       
Query: 125 gccctaaaactcaacattagtacagatagttaaagatgcatctttggtgtgggtttgtcc 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 gccctaaaactcaacattagtacagctagttaaagatgcatctttggtgtgggtttgtcc 384

                                                                       
Query: 185 cctgggcttgagctacatggagagtggcattaccatgtaggaggtcccatggtgacagca 244
            |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgggcttgagctacacggaaagtggcattaccatgtaggaggtcccatggtgacagca 444

                                                                       
Query: 245 gctttcttgaaatttgtgacagttcttggatttggatatgagatattttaggggaaatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctttcttgaaatttgtgacagttcttggatttggatatgagatattttaggggaaatgg 504

                           
Query: 305 ggaagatataaatgat 320
           ||||||||||||||||
Sbjct: 505 ggaagatataaatgat 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)