Query= MSMg01no294_c05.b1 MSMg01no294_c05.b1 CHROMAT_FILE:
MSMg01no294_c05.b1 PHD_FILE: MSMg01no294_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:45 2005
(320 letters)
>mm_chr19_21454548_21455269
Length = 722
Score = 572 bits (296), Expect = e-168
Identities = 312/318 (98%), Gaps = 2/318 (0%)
Strand = Plus / Plus
Query: 5 gaattcatatacatttacaatgacagtgcacagtagggacatggctagagaaagactcga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatacatttacaatgacagtgcacagtagggacatggctagagaaagactcga 264
Query: 65 tgcctgacttggtgcggaaaaatgcattactccttaaaaggtcattttattaatttaaag 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcctgacttggtggggaaaaatgcattactccttaaaaggtcattttattaatttaaag 324
Query: 125 aacagagaatccttcccctttatctattttttcattaaaatgtttatacaatagattttg 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 aacagagaatccttcccctttatctatttttccattaaaatgtttatacaatagattttg 384
Query: 185 atcatattctttcccctctcccaacatccctgatcttcccccacctccattcccacccaa 244
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 385 atcatattctttcccctctcccaacatccctgatcttcccccacttccattcccacccga 444
Query: 245 cttcttgttctttctctcaaaaagaaaaaggaaatgataaaaaaaaa--gaaagccaaac 302
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 cttcttgttctttctctcaaaaagaaaaaggaaatgataaaaaaaaaaagaaagccaaac 504
Query: 303 taaaccaaaaagacaaac 320
||||||||||||||||||
Sbjct: 505 taaaccaaaaagacaaac 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space: 221743
Effective search space used: 221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no294_c05.g1 MSMg01no294_c05.g1 CHROMAT_FILE:
MSMg01no294_c05.g1 PHD_FILE: MSMg01no294_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:45 2005
(290 letters)
>mm_chr19_21615889_21616578
Length = 690
Score = 513 bits (265), Expect = e-150
Identities = 283/291 (97%), Gaps = 6/291 (2%)
Strand = Plus / Minus
Query: 1 tatctttcaaaagaaaacagagaaatatcatgaccgagacaag--ata-tacccaaagaa 57
|||||||||||||||||||||||||||||||||| |||||||| ||| || ||||||
Sbjct: 423 tatctttcaaaagaaaacagagaaatatcatgacggagacaagaaatagta---aaagaa 367
Query: 58 aatcccgatgaattgtatcttataaatgcttaaaaaaaccaaaacaaaccctttctacaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aatcccgatgaattgtatcttataaatgcttaaaaaaaccaaaacaaaccctttctacaa 307
Query: 118 aagacagtttacaaaattgaggtgaggagctactaacaaggagaaaatatttgtaaaatc 177
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aagacagtttacaaaattgaagtgaggagctactaacaaggagaaaatatttgtaaaatc 247
Query: 178 atggttgatgaaaatcttgtattaaaacaaaaactttcaaaacacttgtattggctggtt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atggttgatgaaaatcttgtattaaaacaaaaactttcaaaacacttgtattggctggtt 187
Query: 238 ttgtgtcaacttgacacagctggagttatcacagagaaaggagcttcagtt 288
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttgtgtcaacttgacacagctggagttatcacagagaaaggagcttcagtt 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
