BAC Information

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BAC

Clone NameMSMg01-294C21
Chromosome19 (Build37)
Map Location 35,383,183 - 35,383,420
singlet/doubletsinglet
Overlap genenone
Upstream geneFas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
Downstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294C21.T7 (MSMg01no294_c21.b1)MSMg01-294C21.TJ (MSMg01no294_c21.g1)
ACCAG422420AG422421
length736732
length of high quality
(start - end)
276 (436 - 711)239 (123 - 361)
definitionCHROMAT_FILE: MSMg01no294_c21.b1 PHD_FILE: MSMg01no294_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:48 2005CHROMAT_FILE: MSMg01no294_c21.g1 PHD_FILE: MSMg01no294_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAGATCCGCGGAATTCCA
GCTGTCTTTCTCCACATTTCCTCCCTCAACCATGTCTTCTCCCTCTCCTC
ACCTGATCCTCCATTTCACTCTTTCCAGCTTCCAGTAAATCCATAAAATC
TACTCCATATCACCCTCCCAGGGACACTCATGTGTCCTCTCCTCCATACC
CAATCTATTTGGGTCTACAAATTGTAGCTTGGTTATTGTTTATTTAATGA
CCAACATCCATATATAAGTGAGTATATACTACATTTATCATTATGCATCT
GAGTTACCCAAACTCGTTATTGTTTTTATTCTGGCTCCACCCACTTGCCT
TCGAATTTTGTGTTATCATTCCCCCCACCGCTAAGTAATAAATACTACAT
TGTGCAAATGTAGCACCCTCTTTGAACAAAAATCTGTTGAGGGACACCTA
AGTTGTTCCCAGTTTCTGCCTATTTTAAATAGAGTAACTTAACATTGTTG
AAGGAGTAGAATAAAGCATCCTTTGGGTACATACCCAAAACTAGTAGAGA
TAGGTTTTGAAGTAGAGTGATTCCCAGATTTCTGAAGAACTGTTATATTT
ATTTCCGTACAGGGGATAAATTTTTGCACTCCCATGGGCAATGGAAGAGT
ATTCCCCTTATTCCATATTGATTAGAGTTAGCCCAAGATGTTTTATGTTA
TTTGAGGCTATTGTTAAAGGTGTTGTTTCCCTGATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGACAGCCTCCAGCACCAGACACATCTGCA
AGTGTCTGGGGAATATCACCCCCTATGAGAAGGCCTGGTGGGCAATCCCA
GGGAAGGGTCTGCCCTTTCTAGGTTCTGATTTGAGCTGCTTGTGAATACA
AGGAGCAAAATCCCAAACAGTGACAATTGGTAATAAATAGCTCCCTTTTC
TCTACCTTCCATCTCTTCCATCCTAGACCAGTAGGCGCTCAGCCTACTTT
CTGCTCCTTTGACAGCTTCCTCATTATATTCCACCCAATCACTCAAGTGC
AGTTAAAATGCTTGCCCCTCCCCCCCCCCCCCTGCTTTTCCACTGTAATC
TTCCTCTGCTATACCCGCGGATACTAAAAAAATCATTCGACGGGGTGCGT
TCTGAGGAGCTAGGTTTGATACACATCTGGTCTGATTACCCTGGAGGATC
CTAAGTTCATTGAGAGAAGGAACACACTTGTTCCACTGCCCACTGCCTAA
TGTAGGTGTTTATGAAACTCAGGAAATGAGTGGGCTCGCCTATAGTTCAC
TCTCCTGACGTTAAAACACAGGCTCAAGTGTGGTTACTGTATCTACTAGC
TCTGAGTCTTGAGATGAATTACAGGGCCCTTTAAGCTATCCTGTTTTGTT
ATTAGTTAAGTTTGTTTTTCTTTTTGCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_c21.g1 MSMg01no294_c21.g1 CHROMAT_FILE:
MSMg01no294_c21.g1 PHD_FILE: MSMg01no294_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:48 2005
         (239 letters)



>mm_chr19_35382983_35383620
          Length = 638

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%), Gaps = 1/239 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgagaaggcctggtgggcaatcccagggaagggtctgccctttctaggttctgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgagaaggcctggtgggcaatcccagggaagggtctgccctttctaggttctgattt 260

                                                                       
Query: 61  gagctgcttgtgaatacaaggagcaaaatcccaaacagtgacaattggtaataaatagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctgcttgtgaatacaaggagcaaaatcccaaacagtgacaattggtaataaatagct 320

                                                                       
Query: 121 cccttttctctaccttccatctcttccatcctagaccagtaggcgctcagcctactttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttttctctaccttccatctcttccatcctagaccagtaggcgctcagcctactttct 380

                                                                      
Query: 181 gctcctttgacagcttcctcattatattccacccaatcactcaagtgcagttaaaatgc 239
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gctcctttgacagcttcctcattatattccaccca-tcactcaagtgcagttaaaatgc 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)