BAC Information

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BAC

Clone NameMSMg01-295E01
Chromosome19 (Build37)
Map Location 34,000,941 - 34,001,573
singlet/doubletsinglet
Overlap genenone
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127
Downstream geneLipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295E01.T7 (MSMg01no295_e01.b1)MSMg01-295E01.TJ (MSMg01no295_e01.g1)
ACCAG423199AG423200
length746751
length of high quality
(start - end)
697 (50 - 746)668 (79 - 746)
definitionCHROMAT_FILE: MSMg01no295_e01.b1 PHD_FILE: MSMg01no295_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:08 2005CHROMAT_FILE: MSMg01no295_e01.g1 PHD_FILE: MSMg01no295_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATTAATTTCAGGTTTTCTGCTGTGGGAAATTCCACCTTGT
TTATTTTGTGTTGTATTCTTGCCAATGTGAAGCTCATTTACATTTATTAA
AGTCTTACAGATGATCTTTGAGACTTTTTTTTTCTGACTGCTGGCTCAAA
CATTTGAGACCCACCGTAATTAAGGATCAACTCATCACTCTTAAATAATA
AAATAGTCTCTGATTATTGGAAGCAAAACCTATGCAAAGCATCACACATT
GATTGTAAATGATCTCTAGATTTTTAAATCATTAAAAATGATTAATGTGT
CCTCCCTGTAGCATATTCAGCTCACTCGCGCACATGAACACCTATATACC
AATCTACTTATCTATCTACAATCATTCTGTCTGTCACATTATAAATTGGA
CAAATGGGTACATTAGTTAGAAATATCTTTTCTGTCCATCTGTCCTGAAT
CACATTTGTTCTTTGAAAATATATTCTTTGTACAAACTGAAACAATATCA
TTCAAATCTGTTTGAGACCTGACCAAGATAGTGGAGAAACATTCATGAAG
CATTTTCTAAGAATAATGGCCACTCCATTTTTCAACACATTCAATGTCAT
TTAGAAAGAACACACACACACACACACACACACACACACACACACACACA
CACACACACACACATACATTCTTCAGAATACAAACTTCAGCACTGT
ATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTTACACCAATAAGAATGG
ATAAGATTAAAAAAACTCAAGTGACAGCACATGCTGACAAGGAAGTGGAG
ACAGCAGAACCCCCCCACACACACACACACACACATTGCTGCTGGGATTG
CAAACTGGTACAACCACTCTGGAAATCAGAAAGTTAAAAATTGTTTTACC
TGAAGACCCAATTTTACCACTCCTGAGCATATACCCAAAAAAAGATGGCC
CACCATGCCCTTTTAACTTCAGTCTTTGGTTTGCTATCATTTCTCTGTGT
ACTCTGGTTGGGAATTGTTCTTGTTATATCCTCATAGCGAAACTCTATTA
ACCAGTCTTACAAAACTGCTTTTATCTCTTTCCAGAAAGCAGGGACCTAT
GCAAGTGTTGGGCAAATACTGCTGTAGTGAGCTATATGACAGCCCCATCT
AGTGTCTTATTCAGAAATATAAAAAAAAAACATTTGAATTTGTGAGAAGG
AAATTCAAAGTAATGGATGGTTCTCATGCACTCAGCTTTAATTAGTTAAA
ATGTAGTGTAATTAGTTTTGTAAAAAAATTATTGCAATAATATAGGAAAA
CGGTTAAAGTAAATAAAGTTAGTTAAACTTTAGACAGAGAAAGACTTGGA
GAGATGCAGAAATTCCTAAGAAAGAACAAAAGCAGTCCCAGGCAACTGCA
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_e01.g1 MSMg01no295_e01.g1 CHROMAT_FILE:
MSMg01no295_e01.g1 PHD_FILE: MSMg01no295_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:08 2005
         (668 letters)



>mm_chr19_34000510_34001573
          Length = 1064

 Score = 1143 bits (591), Expect = 0.0
 Identities = 619/637 (97%), Gaps = 15/637 (2%)
 Strand = Plus / Minus

                                                                        
Query: 43   gtgacagcacatgctgacaaggaagtggagacagcagaacccccc-----------caca 91
            |||||||||||||||||||||||||||||||||||||||||||||           ||||
Sbjct: 1064 gtgacagcacatgctgacaaggaagtggagacagcagaacccccccccccccaccacaca 1005

                                                                        
Query: 92   cacacacacacacacattgctgctgggattgcaaactggtacaaccactctggaaatcag 151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 cacacacacacacacattgctgctgggattgcaaactggtacaaccactctggaaatcag 945

                                                                        
Query: 152  aaagttaaaaattgttttacctgaagacccaattttaccactcctgagcatatacccaaa 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 944  aaagttaaaaattgttttacctgaagacccaattttaccactcctgagcatatacacaaa 885

                                                                        
Query: 212  aaaagatggcccaccatgcccttttaacttcagtctttggtttgctatcatttctctgtg 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  aaaagatggcccaccatgcccttttaacttcagtctttggtttgctatcatttctctgtg 825

                                                                        
Query: 272  tactctggttgggaattgttcttgttatatcctcatagcgaaactctattaaccagtctt 331
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 824  tactctggttgggaattgttcttgttatatcctcatagcgaaactctattaaccagcctt 765

                                                                        
Query: 332  acaaaactgcttttatctctttccagaaagcagggacctatgcaagtgttgggcaaatac 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  acaaaactgcttttatctctttccagaaagcagggacctatgcaagtgttgggcaaatac 705

                                                                        
Query: 392  tgctgtagtgagctatatgacagccccatctagtgtcttattcagaaatataaaaaaaaa 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  tgctgtagtgagctatatgacagccccatctagtgtcttattcagaaatataaaaaaaaa 645

                                                                        
Query: 452  acatttgaatttgtgagaaggaaattcaaagtaatggatggttctcatgcactcagcttt 511
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 644  ----ttgaatttgtgagaaggaaattcaaagtaatggatggttctcatgcactcagctat 589

                                                                        
Query: 512  aattagttaaaatgtagtgtaattagttttgtaaaaaaattattgcaataatataggaaa 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588  aattagttaaaatgtagtgtaattagttttgtaaaaaaattattgcaataatataggaaa 529

                                                                        
Query: 572  acggttaaagtaaataaagttagttaaactttagacagagaaagacttggagagatgcag 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528  acggttaaagtaaataaagttagttaaactttagacagagaaagacttggagagatgcag 469

                                                 
Query: 632  aaattcctaagaaagaacaaaagcagtcccaggcaac 668
            |||||||||||||||||||||||||||||||||||||
Sbjct: 468  aaattcctaagaaagaacaaaagcagtcccaggcaac 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1064
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1054
Effective search space:   693532
Effective search space used:   693532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)