BAC Information

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BAC

Clone NameMSMg01-295N12
Chromosome19 (Build37)
Map Location 9,391,566 - 9,391,874
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2
Downstream geneLOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295N12.T7 (MSMg01no295_n12.b1)MSMg01-295N12.TJ (MSMg01no295_n12.g1)
ACCAG423622AG423623
length745744
length of high quality
(start - end)
313 (43 - 355)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no295_n12.b1 PHD_FILE: MSMg01no295_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:53 2005CHROMAT_FILE: MSMg01no295_n12.g1 PHD_FILE: MSMg01no295_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTGGAAAGGTGAGCTGCTTTTGAACACACTGATTCTGTAACTACAGA
AAAAAAATGTCTTAGTACCTGAGTCCCAAGACACATCAACACTGGTACAA
ATTGTCTAATATAATAGCCCTAAAACTCAACATTAGTACAGATAGTTAAA
GATGCATCTTTGGTGTGGGTTTGTCCCCTGGGCTTGAGCTACATGGAGAG
TGGCATTACCATGTAGGAGGTCCCATGGTGACAGCAGCTTTCTTGAAATT
TGTGACAGTTCTTGGATTTGGATATGAGATATTTTAGGGGAAATGGGGAA
GATATTTATTATACTAGACCACCCCCGGCCTCCTAATAATTGTATTTATG
AAACTGTTTAACTGCACAAGGAGATAATATCACAAACTGCAGGAGATGAC
CAATGAGTATACAGCTAGTGAGTCACATAACATGTGTGAAGGATTGTTCT
GACCCCTTCAATTTGGATCACTTACTTCGTAGTCCTACTGTTAGGAAGAA
CAGCTCATATACCATGAGTTCACTTGAAGTAATGAAAGAAATACGCATTG
CTCCTAAGAATGTAGTTGGCATAAACATAATTTGCATCCTACTGTACTCT
GCTTCATTTACAAAAAATCTTCTCTAACAATGCGAACAAGGAGGCAATTC
CTCAATTACGTGTACGACCTGAAGCCCCGCGCGAAGGCTTACCTA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATATCATCTGTCTTTAATATCTCTCAA
CATCAACAAACTCAATTCCTCAATAAAAAGACAAAAGCTAACAGACTGGA
TACATAAACAGGAACCAGCATTTTGCTGCATAGCAGGGGAATACCTCAAT
AACAAAGACAGACATTACCTCAGAGCAAAAGGCTGAAAAAAAAGTCTTCA
AAGAAAATGGCCCAAAGAAACAAACTGGTGTTGCTATCTTAATATCCAAT
AAAATAGACTTTCAACCAAAAGTGATAAGTGACATGGGGAAGGACACTTC
ATAGTTATCTTTTTTTTTCCACCACCCCACGGCATCAATTCTGAACACCT
ATGCCCCAAATGCACGGGCAACTACAAATAAAAAAGAAACTTTACTAAGG
CTCCAAACACATATTGAACCTCACACAATAATAGTGGGAGACTACTTCAA
CACCCCGCTGTCACCAAAGACAGGTCACTGAAACAGAAACTAATTAGAGA
CATAGTGAAATTAATAGAGATGATGAATCAAATGGATTTAACAGACATAT
ACAGAACACCTCACCTTAAATAAGAGAATATACCTTCTTTTTAGCACCTC
ATGACACCTTCTTCAAAATTGACCACATAATCGGTGACGACACTTTGCTC
ATAAAAGGCTTTGAAAACCAAAGTCTATCTTCCATCTTATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_n12.b1 MSMg01no295_n12.b1 CHROMAT_FILE:
MSMg01no295_n12.b1 PHD_FILE: MSMg01no295_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:53 2005
         (313 letters)



>mm_chr19_9391362_9392074
          Length = 713

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtggaaaggtgagctgcttttgaacacactgattctgtaactacagaaaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtggaaaggtgagctgcttttgaacacactgattctgtaactacagaaaaaaa 264

                                                                       
Query: 65  atgtcttagtacctgagtcccaagacacatcaacactggtacaaattgtctaatataata 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtcttagtacctgaatcccaagacacatcaacactggtacaaattgtctaatataata 324

                                                                       
Query: 125 gccctaaaactcaacattagtacagatagttaaagatgcatctttggtgtgggtttgtcc 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 gccctaaaactcaacattagtacagctagttaaagatgcatctttggtgtgggtttgtcc 384

                                                                       
Query: 185 cctgggcttgagctacatggagagtggcattaccatgtaggaggtcccatggtgacagca 244
            |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgggcttgagctacacggaaagtggcattaccatgtaggaggtcccatggtgacagca 444

                                                                       
Query: 245 gctttcttgaaatttgtgacagttcttggatttggatatgagatattttaggggaaatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctttcttgaaatttgtgacagttcttggatttggatatgagatattttaggggaaatgg 504

                    
Query: 305 ggaagatat 313
           |||||||||
Sbjct: 505 ggaagatat 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)