BAC Information

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BAC

Clone NameMSMg01-296A06
Chromosome19 (Build37)
Map Location 37,970,509 - 37,970,794
singlet/doubletsinglet
Overlap genenone
Upstream geneFgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6, Cyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281
Downstream geneFer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296A06.T7 (MSMg01no296_a06.b1)MSMg01-296A06.TJ (MSMg01no296_a06.g1)
ACCAG423742AG423743
length710809
length of high quality
(start - end)
287 (72 - 358)74 (128 - 201)
definitionCHROMAT_FILE: MSMg01no296_a06.b1 PHD_FILE: MSMg01no296_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:06 2005CHROMAT_FILE: MSMg01no296_a06.g1 PHD_FILE: MSMg01no296_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCACGAAATTGAATGTCTGCTTATGTGGAATGAGTTCATAATGAGTCA
ACGTTTTTAACCCATTAAAGGCCCACCATCTTCGAAGCTGAGTGCTGTGT
TTGTTCAGCGTTGAATGAGAACTCCCTAATCTTCCTTCAGTTAAACATGA
TGAGGTCCCAAGGAAGATGAAGGGGAGGGGCCCCTTCCCCCTGGATATAC
ATCCGTGAAGTGAAATGCCAGAGTTCATGTAGTTCAAGAAAAACACAAGA
GAGGCATGTAGCTGGGACTAACTTTGAGGCCTAGAGAGTGTGGGGACATA
ATGTGAAACACAGGCCTGCGTGTGAGGGGTGCTCTGCTGACTGGGGTACA
CATTTCCCAGAGAGTCTCAGCCCCAAGTTTTAAAGATCTGAATAAACTGA
ATAAGGGGTCTGTGTGTGTATGTGCGTGTATGTGTGTGTATGTGTGTGTG
TATGTGTGTGTGCATTCTTTCCTCCTTTTTTATACCCTCATTTATTCGCT
CTCCTAAAACCTACGCTCTACTTAATTTTTTCTCCCTCCTTTCTTTATTT
TTGTCTTCTTTTTATCTTTTTCTCCTTTTCCTCACGCATATACAACCAAC
CTTTTTTACCTACTTTCTCTCTTCTCTTCCTTATTTTATCCACCCCTTTC
CCTCTTTTTCTTCCTTTACACACCACTGTTTAATCGCTTCGTAACTTCAT
TGCAATTCTG
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGACAGAGGAGTATGCGTGAGAG
TTGTGTGTATGTGTGAGCATGTCCCTGTGAGTTTGACTGTGTAAATGTGT
GTGTGTGTGTGTATGTGTGAGTGTTATGTTGGGATAATACTATTGCGCAC
TGGTTCCCCCCCATCACCCGCCCCTACCCTTCCCATGCCCCCTTCTCCCC
CCTCCCCCCCCCCTCACCCCTTCTACCTACCCACACTGCCCTTCATTCCA
CCTTCCCCCCCCCACCCCCCCCTTTCTCCTTTCCTGCCCCCGCACCCCCC
CCCACCACCCCTTGTTTTTCCTCTTTCTCCCCCCCCCCCCCCCCCCTCTT
CATTTCCCCCCCCCTTTTTTCCTTTTTCACCCCCCCCCCTTTTTAACATA
CCCCTCTCCCCGCCCCCCTTCCCCCCCTCTCCCCCTCCCCTTCCCCCCCC
CCCTTCCCCTCTTTCTTCCCCTCCCCTCCCCCCCCCCTTCCCCCCTTCCC
CCTCTCCCCCCTCCCCCCCCCCCCCCTCTTTTTTTCCCCCCCCCTCTTTC
TCCCCCCTTTTCCCCCCCCCTCCCCTCTTCCTTTTCTCCCCCTCTCTTCT
CCCCCTCTCTTCCCCTCCCCCTTCCCCTTCCCCCCTTTTTTCCCCTCTTT
TTCCCCCCCTTTTCCCCCCTCCCCCCCCCCCTCCCCCCCCCCCTCCCCCC
CCCTTCCCCCCCTCCCCCCTTTTTTTCCCCTCCTCCCTCCCCCCGCTCCC
TTTTCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_a06.b1 MSMg01no296_a06.b1 CHROMAT_FILE:
MSMg01no296_a06.b1 PHD_FILE: MSMg01no296_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:06 2005
         (287 letters)



>mm_chr19_37970309_37970995
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccaccatcttcgaagctgagtgctgtgtttgttcagcgttgaatgagaactccctaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cccaccatcttcgaagctgagtgctgtgtttgttcagcgttgaatgagaactccctaatc 427

                                                                       
Query: 61  ttccttcagttaaacatgatgaggtcccaaggaagatgaaggggaggggccccttccccc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 426 ttccttcagttaaacatgatgaggtcccaaggaagatgaaagggaggggccccttccccc 367

                                                                       
Query: 121 tggatatacatccgtgaagtgaaatgccagagttcatgtagttcaagaaaaacacaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tggatatacatccgtgaagtgaaatgccagagttcatgtagttcaagaaaaacacaagag 307

                                                                       
Query: 181 aggcatgtagctgggactaactttgaggcctagagagtgtggggacataatgtgaaacac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 306 aggcatgtagctgggactaactttgaggcctagagagtgtggggacataatgggaaacac 247

                                                         
Query: 241 aggcctgcgtgtgaggggtgctctgctgactggggtacacatttcc 286
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aggcctgtgtgtgaggggtgctctgctgactggggtacacatttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)