BAC Information

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BAC

Clone NameMSMg01-296A13
Chromosome19 (Build37)
Map Location 25,367,054 - 25,367,645
singlet/doubletsinglet
Overlap geneAnkrd15
Upstream genePip5k1b, LOC100042457, 2900009I07Rik, E030010A14Rik, Pgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503
Downstream geneLOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806, 1700048O14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296A13.T7 (MSMg01no296_a13.b1)MSMg01-296A13.TJ (MSMg01no296_a13.g1)
ACCAG423756AG423757
length750746
length of high quality
(start - end)
313 (438 - 750)592 (69 - 660)
definitionCHROMAT_FILE: MSMg01no296_a13.b1 PHD_FILE: MSMg01no296_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:07 2005CHROMAT_FILE: MSMg01no296_a13.g1 PHD_FILE: MSMg01no296_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCGAAGGCTCTCAAGTTTT
CTTAAGTTTAATGATGACTTTGTGCCTATGGTTAAAAGCAAACATCTTTA
TCAGCTATAAAAACATAAGCTTTTATAAGAGACACTGCTTACTTTTGCTT
AAGATGGAATAGCAAAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCACTGCTGGTAGGATTGCAAGC
TGGTACAACCACTCTGGAAGTCAGTCTGGAGGTTCCTCAGAAAATTGGAC
ATAGTACTACCATTATTATTCAGCACTCCCTCCCCTGGGCATATACCCAG
AAGTTCCAACTGGTAATACCACCATCTGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGAAAAGAACCCAGATGTCCCTCAACAGA
AGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAG
CTATTAAAAACAATGGAGTTATGAAATTCTTGGACAAATGGATTTATCTG
GAGGGTATCATCCTTAGTGAGGTAACCCAATCACAAAAGAAGTTATTAGA
TATGCACTCACTGATAAGTGGATATTAGCCCAGAAACATAGAACACCCAA
GATACAATTTGCAAAACAGAAGAAAATCAAGAATAGGGAAGACCAATGCG

CGATGCAGTGGGAGGCCTGGCGGCCGCCTGGTTCTTCACTAGAGGTGAAC
TATAGAAGTACCGNCAAAATTCCTATTCCGAAGGCTCTCAAGTTTTCTTA
AGTTTAATGATGACATTGTGGTTATGGTTAAAAGCAAACATCTTTATCAG
CTATAAAAACATAAGCTTTTATAAGAGACACTGCTTACTTTTGCTTAAGA
TGGAATAGCAAAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGA
TGTGGAGAAAGAGGAACACTCCTCCACTGCTGGTAGGATTGCAAGCTGGT
ACAACCACTCTGGAAGTCTGTCTGGAGGTTCCTCAGAAAATTGGACATAG
TACTACCAGAAGATCCAGCAATAACTTTCCTGGGCATATACCCAGAAGTT
CCAACTGGTAATAACAACATCTGCTCCACTATGTTCATAGCAGCCTTATT
TATAATAGCCAGAAGCTGAAAAGAACCCAGATGTCCCTCAACAGAAGAAT
GGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATT
AAAAACAATGGAGTTATGAAATTCTTGGACAAATGGATTTATCTGGAGGG
TATCATCCTTAGCGAGGTAACCCAATCACCAAAGAAGTTATTAGATATGC
ACTCACTGATAAGTGGATATTAGCCCAGAAACATAGAACACCCAAGATAC
AATTTGCTAAACAGAAGAAAATCTTGAATAGGGAAGACCAATGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_a13.g1 MSMg01no296_a13.g1 CHROMAT_FILE:
MSMg01no296_a13.g1 PHD_FILE: MSMg01no296_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:07 2005
         (592 letters)



>mm_chr19_25366854_25367845
          Length = 992

 Score =  936 bits (484), Expect = 0.0
 Identities = 565/592 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctattccgaaggctctcaagttttcttaagtttaatgatgacattgtggttatggt 60
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 attcctattcagaaggctctcaagttttcttaagtttgatgatgacattgtggttatggt 260

                                                                       
Query: 61  taaaagcaaacatctttatcagctataaaaacataagcttttataagagacactgcttac 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 taaaagcaaacatctttattagctataaaaacataagcttttataagagacacagcttac 320

                                                                       
Query: 121 ttttgcttaagatggaatagcaaaagatcaaaaattcaggtgacagcagatgctggcgag 180
           |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||
Sbjct: 321 ttttgcttaagatggaatagtaaaagataaaaaattcaggtgacagcagatgctggtgag 380

                                                                       
Query: 181 gatgtggagaaagaggaacactcctccactgctggtaggattgcaagctggtacaaccac 240
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gatgtggaaaaagaggaacactcctccattgctggtaggattgcaagctggtacaaccac 440

                                                                       
Query: 241 tctggaagtctgtctggaggttcctcagaaaattggacatagtactaccagaagatccag 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggaagtcagtctggaggttcctcagaaaattggacatagtactaccagaagatccag 500

                                                                       
Query: 301 caataactttcctgggcatatacccagaagttccaactggtaataacaacatctgctcca 360
           ||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 501 caatacctctcctgggcatatacccagaagttccaactggtaataagaacatctgttcca 560

                                                                       
Query: 361 ctatgttcatagcagccttatttataatagccagaagctgaaaagaacccagatgtccct 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ctatgttcatagcagccttatttataatagccagaagctggaaagaacccagatgtccct 620

                                                                       
Query: 421 caacagaagaatggatacagaaaatgtggtacatttacacaatggagtactactcagcta 480
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 taacaaaagaatggatacagaaaatgtggtacatttacacaatggagtactactcagcaa 680

                                                                       
Query: 481 ttaaaaacaatggagttatgaaattcttggacaaatggatttatctggagggtatcatcc 540
           |||||||||||||||||||||||||||||||||||||||  || ||||||| |||| | |
Sbjct: 681 ttaaaaacaatggagttatgaaattcttggacaaatggaggtacctggaggatatcgttc 740

                                                               
Query: 541 ttagcgaggtaacccaatcaccaaagaagttattagatatgcactcactgat 592
           |||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 741 ttagtgaggtaacccaatcacaaaagaagtcattagatatgcactcactgat 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)