BAC Information

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BAC

Clone NameMSMg01-298F16
Chromosome19 (Build37)
Map Location 40,390,665 - 40,391,082
singlet/doubletsinglet
Overlap geneSorbs1
Upstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, A930028N01Rik
Downstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298F16.T7 (MSMg01no298_f16.b1)MSMg01-298F16.TJ (MSMg01no298_f16.g1)
ACCAG425427AG425428
length716806
length of high quality
(start - end)
221 (354 - 574)452 (132 - 583)
definitionCHROMAT_FILE: MSMg01no298_f16.b1 PHD_FILE: MSMg01no298_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:01 2005CHROMAT_FILE: MSMg01no298_f16.g1 PHD_FILE: MSMg01no298_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATTGCGAGAGGATGCGCGGAATTCAGGCCATTTTCCTTTATGAAT
ATCGATGCAAAAGTACTCAATAAAATTCTTGCAGACCGAATCCAAGACCA
CATCAAAACAATCATCTTTCATGATCAAGTAGGCTTTATCCCTAGGATGC
AGGGATGGTTTAATATACAGAAATCCATCAACGTAATCCACTATATAAAC
AAACTCAAAGACAAAAAGGACATGATCATCTCATTAGATGCTGAGAAAGC
ATTTGACAAAGTTCAACACCCATTCATGATAAAAGTCTTGGAAAGATCTG
GAATTCAAGGGCCATACCTAAACATAATAAAAGTAATATATAGTAAACCA
GTAGCCAACATCAAACTAAATGGAGAAAAACTTGAAGCAATCTCACTAAA
ATCAGGGACTACACAAGGCTACCCACTTTCTCCCTACCTATTCAATATAG
TACTTGAAGTACAAGCCAGAGCAATTACACAACAAAAGGAGATCAGGGGG
ATACAAATTGGAAAGGGAGAAATCAAAATATCACTATTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAATAGTTCCACCAGAGAACTCCTAAACC
TGATAAACAGCTGCAGTGCAGTAGCTGGATATAAAATTAACTCAAACAAA
TCAGTGGTATTTCTCTACCCAAAGGGAAAATAGGCTGAGAACGAAATTAG
GGAAAGAACAATCTTN
CCCTCCCCCCTTCNNCCTTTCCTTTCGTCCTTTTCTCACAACTCACCNNN
NNNCCCAATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAAAAGTGTTTCCCC
CCCCCCACACACACACTTTTTGGGTAACCAGTCAGATAGAAGAAGTAAGA
AGGCCAGAGGTCCATGGGACTGTCATCATTTATCAGTACTGCTAATGCCA
GAGAGCAGTGCCTGCCTCATGTTCCCATCATGCCCTGCTGCCTTCTTAAC
AAGTCTATGTCCCGTGGTTGGTAGTGCATGCTTAGCTAAGGATAGATCAC
TATGAGTGTGTCCTATTGAGGAGCGTTTGTCATTAGAGACTGTTGGATGA
TGGGGCAAGGGCTTGATGTATGGTTCTGGAACCTGGAGTTGGCAGATGAT
GATGTTGCATTGCAACAATAAAAGGCTATACAAATCTGAAAGGATCTTGT
ACTGTTGGTCCCCAGGCCTCTAACACTAGACCTAGGTATGCGGACCTTGT
GGGAGCTGAGAGTGTGGCCTGAAGGATTGCGCTGGTGAAACCACTTTCCT
GTAGACTAGTTCCTGGTTTTCTCCATTGAAGAACTGGGTCAGACCAAGCT
GCTGTCTATTTACGTGTACAAGGCCTTTATATAGAAAGAGGTCATGTGCC
TCAGTTGCCTAATAGCCAAGTTATCCGGTCCTGAGGAGCCCTGAGGTAAG
ACATTTGGTCTCAGGAAGTCCTGATTTCATCTTTTCTTCAGAGAGGTAGA
CTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_f16.g1 MSMg01no298_f16.g1 CHROMAT_FILE:
MSMg01no298_f16.g1 PHD_FILE: MSMg01no298_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:01 2005
         (452 letters)



>mm_chr19_40390431_40391282
          Length = 852

 Score =  716 bits (370), Expect = 0.0
 Identities = 406/418 (97%)
 Strand = Plus / Minus

                                                                       
Query: 35  ctttttgggtaaccagtcagatagaagaagtaagaaggccagaggtccatgggactgtca 94
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 652 ctttttgggtaaccagtcagatagaagaagtaagaaggccagaggtccgtgggactgtca 593

                                                                       
Query: 95  tcatttatcagtactgctaatgccagagagcagtgcctgcctcatgttcccatcatgccc 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcatttatcagtactgctaatgccagagagcagtgcctgcctcatgttcccatcatgccc 533

                                                                       
Query: 155 tgctgccttcttaacaagtctatgtcccgtggttggtagtgcatgcttagctaaggatag 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgctgccttcttaacaagtctatgtcccgtggttggtagtgcatgcttagctaaggatag 473

                                                                       
Query: 215 atcactatgagtgtgtcctattgaggagcgtttgtcattagagactgttggatgatgggg 274
           |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||
Sbjct: 472 atcactatgagtgtgtcctattgaggagcgtaagccattagagactgttggatgatgggg 413

                                                                       
Query: 275 caagggcttgatgtatggttctggaacctggagttggcagatgatgatgttgcattgcaa 334
           |||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct: 412 caagggcttgatgtatggttctggaacctggagttggcggaggttgatgttgcattgcaa 353

                                                                       
Query: 335 caataaaaggctatacaaatctgaaaggatcttgtactgttggtccccaggcctctaaca 394
           |||||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||
Sbjct: 352 caataaaaggctatacaaatctgaaaggatcttgtactgttttttcccagtcctctaaca 293

                                                                     
Query: 395 ctagacctaggtatgcggaccttgtgggagctgagagtgtggcctgaaggattgcgct 452
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctagacctaggtatgtggaccttgtgggagctgagagtgtggcctgaaggattgcgct 235


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)