Query= MSMg01no298_g24.b1 MSMg01no298_g24.b1 CHROMAT_FILE:
MSMg01no298_g24.b1 PHD_FILE: MSMg01no298_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:07 2005
(541 letters)
>mm_chr19_45702059_45702999
Length = 941
Score = 946 bits (489), Expect = 0.0
Identities = 533/557 (95%), Gaps = 19/557 (3%)
Strand = Plus / Plus
Query: 2 gaattcaacttgagtttc-atccctgggacctacatggtgaaagggcagaaataattcct 60
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaattcaacttgag-ttctatccctgggacctacatggtgaaagggcagaaataattcct 245
Query: 61 gaaggttgtcctctgccttctacatgtgcaaccaaggcacaaaggcatgtgagcatgca- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gaaggttgtcctctgccttctacatgtgcaaccaaggcacaaaggcatgtgagcatgcac 305
Query: 120 -ca--------------cacacacacacacacacacacacacacacacaaataaatgaaa 164
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcacgcgcgcgcgcgcgcacacacacacacacacacacacacacacacaaataaatgaaa 365
Query: 165 gaacgaatgcaagtttttttaagctagagtctacaggcatggtggcacgcatcttgaatc 224
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 366 gaacgaatgcaag-ttttttaagctagagtctgcaggcatggtggcacgcatcttgaatc 424
Query: 225 tcagacctggggaggcacatgtagacagatctctgtgagctccaggccagctacagagtg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcagacctggggaggcacatgtagacagatctctgtgagctccaggccagctacagagtg 484
Query: 285 agaagctgtctcagaaacaaaataaacaaaaacagaatttaagccatcgtttgtgaaatt 344
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 485 agaagctgtctcagaaacaaaataaacaaaaacagagtttaagccatcgtttgtgaaatt 544
Query: 345 aaggaaaaagccatatcaaataactcgacagttaacactaaacagtcagccaacacgggg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aaggaaaaagccatatcaaataactcgacagttaacactaaacagtcagccaacacgggg 604
Query: 405 caaaagagtcatccagggcaaggaaaatatagcaaggaaactgaaggagatgcgaggaga 464
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 605 caaaagagtcatccagggcaaggaaaatatagcaaggaaactgaaggagatgtgaggaga 664
Query: 465 gcagaaaagggccaagaaaggccgcacagagagagcgctgcacagagtgtggtacgtaca 524
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 665 gcagaaaagagccaagaaaggccacacagagagagcgctgcacagagtgtggtacgtaca 724
Query: 525 tcacagtaacgcaagta 541
|||||||||||||||||
Sbjct: 725 tcacagtaacgcaagta 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_g24.g1 MSMg01no298_g24.g1 CHROMAT_FILE:
MSMg01no298_g24.g1 PHD_FILE: MSMg01no298_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:07 2005
(402 letters)
>mm_chr19_45855158_45855959
Length = 802
Score = 770 bits (398), Expect = 0.0
Identities = 401/402 (99%)
Strand = Plus / Minus
Query: 1 cactttgtgtcccaaactggcatttagtttgaggccatcttgccatacaagagtctttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cactttgtgtcccaaactggcatttagtttgaggccatcttgccatacaagagtctttat 437
Query: 61 tgtattgtctcagatcctaggatggggaaggataggaagagaactctgagggatacagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgtattgtctcagatcctaggatggggaaggataggaagagaactctgagggatacagag 377
Query: 121 aattcagaactagccatgttgttgacagtctgtaatctagggttgggaggccagccctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aattcagaactagccatgttgttgacagtctgtaatctagggttgggaggccagccctgg 317
Query: 181 taacaaagtaagatcttgttttagcaacaagtgaaaggaggtagcttactgtgccttctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taacaaagtaagatcttgttttagcaacaagtgaaaggaggtagcttactgtgccttctc 257
Query: 241 ttggtagtactaaatgtgaatctctttaaagtatattaaaacagctctcattggatgtgg 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttggtagtactaaacgtgaatctctttaaagtatattaaaacagctctcattggatgtgg 197
Query: 301 cttacacccttgatcttagtgctctgaaacagaggcagaatcagatagatattcgagggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cttacacccttgatcttagtgctctgaaacagaggcagaatcagatagatattcgagggt 137
Query: 361 ttttgaggccagtgtggtctacagagcacgttccagtgctgc 402
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttttgaggccagtgtggtctacagagcacgttccagtgctgc 95
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
