Query= MSMg01no298_p21.b1 MSMg01no298_p21.b1 CHROMAT_FILE:
MSMg01no298_p21.b1 PHD_FILE: MSMg01no298_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:47 2005
(275 letters)
>mm_chr19_38762735_38763409
Length = 675
Score = 507 bits (262), Expect = e-148
Identities = 272/278 (97%), Gaps = 6/278 (2%)
Strand = Plus / Minus
Query: 1 gaattcttcagccat---ttcctccttaaatactcagaaatcaggtctgtagccacagtt 57
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaattcttcagccataaat---tccttaaatactcagaaatcaggtctgtagccacagtt 419
Query: 58 acatagtgatttgatatcaactactgaacatattcttactgggatacccaggcatcattt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acatagtgatttgatatcaactactgaacatattcttactgggatacccaggcatcattt 359
Query: 118 ttaatgaggcaagcttaggagaattcccagcagctctgaggcagcattactcttgcccag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttaatgaggcaagcttaggagaattcccagcagctctgaggcagcattactcttgcccag 299
Query: 178 ctcactcttctatattcagaactagaaatggatgtttgagtctggctgcagagatggtag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ctcactcttctatattcagaactagaaatggatgtttgagtctggctgcagagatggtag 239
Query: 238 gcaggagcaaagctgagtgaagaacggtatctgtggaa 275
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gcaggagcaaagctgagtgaagaacggtatctgtggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no298_p21.g1 MSMg01no298_p21.g1 CHROMAT_FILE:
MSMg01no298_p21.g1 PHD_FILE: MSMg01no298_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:47 2005
(550 letters)
>mm_chr19_38598965_38599914
Length = 950
Score = 1017 bits (526), Expect = 0.0
Identities = 544/550 (98%)
Strand = Plus / Plus
Query: 1 tccttctcccctggaaaggaaggtgctccctggaattcaactggagatggaggactcccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tccttctcccctggaaaggaaggtgctccctggaattcaactggagatggaggactctcc 260
Query: 61 catggacgtgagccctgcgggaagtcagcctaggatcatggagtccagcggacctcactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggacgtgagccctgcgggaagtcagcctaggatcatggagtccagcggacctcactc 320
Query: 121 tgaccgcaacacggcggtatttcacttccattatgaagctgacaggacaatgtcggatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaccgcaacacggcggtatttcacttccattatgaagctgacaggacaatgtcggatgc 380
Query: 181 ttttcataccctgtcagaaaacctgattttggatgactgtgcaaattgtgttactcttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcataccctgtcagaaaacctgattttggatgactgtgcaaattgtgttactcttcc 440
Query: 241 tggggggcagcactttaaaaattgcatggcgtatgcttgcaaactggtggagttgacaag 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggggggcagcaaaataaaaattgcatggcgtatgcttgcaaactggtggagttgacaag 500
Query: 301 aacctgtggaagtaagaatgggcaagtccagtgtgagcactgtacctcgctgcgcgatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacctgtggaagtaagaatgggcaagtccagtgtgagcactgtacctcgctgcgcgatga 560
Query: 361 atacctgtgcttcgaaagctcctgctcaaaggccgatgaggtctgctcaggtggtggctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atacctgtgcttcgaaagctcctgctcaaaggccgatgaggtctgctcaggtggtggctt 620
Query: 421 ttgcgaggacggctttgctcacggtcctgctgccaagacttttctgagccctctggagga 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 ttgcgaggacggctttgctcacggtcctgctgccaagacttttctgaaccctctggagga 680
Query: 481 tttctctgacaattgtgaagacgtagacgatttttttaaaagcaaaaaggagcggtccac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttctctgacaattgtgaagacgtagacgatttttttaaaagcaaaaaggagcggtccac 740
Query: 541 tttgttagtc 550
|||||||||
Sbjct: 741 gttgttagtc 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
