CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAGATTGCCCACAGCCTGCGTCCTGATAGTCTTAGCAGTGATGG
TTTCATGAAAGTCACAGACAGGCCAAGCATCTGGTAGCTGTACGGTCCAG
GAGACTGGATGTCTTATCTCAGCAGTCTGGTGTCTGCTAGACTCTGGGCG
GTATTTAGTCTACGTTGGAATCTGGCTGTAACAACAGGGGGAAATGAGCT
GGCCTGGGGAAGTGAGGACAAGCAGACACAAATCCAAGGCTTCCCTCTTC
CATGCCCTATCACGTGAGCTTCTGCTAGAAGATGTAGTTCAGATTTAGGG
TATCTTTTCACCTCAAACAATATGATTAAGAAAATTCCTCAATAGCGTGA
TCAACAGCTTGGGTTTCACCTGATTGCTGATATAGTCAAGTTGACATGCA
AGATTGGCTGTCATATTTGTACATATAAAAACTTAAAACAGAAATCTTAT
GGACTATTACTTATTCTGTGTGATGGACTTTGAGTTTCCATTGCAGTGAA
AATTTAAAATATTGTTAGAAACACATTAAACCAATTCAAGACCCATTAAT
GAATTGCGATGCATAATTTAAGGAGACACCGTTGGGCTAGAGAGGTCACT
CAGTACTTAGGAGTGCTCGGTATTCTTCCAGAGGGTCTGAGTTTGTTTCC
CAGCACCCATGTCAAGCAGCTTACAACTGCCTGTAAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATAGATGTGAATACAGGACTTGAC
CTCTGTCCTTACGAAGCCCACAGTCCAGGGCCCCTAAAGTAGCCAGTGAT
GGGCTGGCTCCAACACTGAGGAAAGACAGCTGCACTTGGTGGGACAGAGG
TCATGGCAGCTTCAGCTTCTCTCTCCCCTCACCTTTCTCTTCACAGAGAA
GTGCCCCACACATTTATTTTTCACTCAGATACTGAAAAGAATTTACAGGG
CACCGTGGAACGGGAAAACCTGTTTTTAGCATCCAAGAGCCATGTGGATT
AAGGCCACCTACTAAGGACAGCTAACGTTTTAAAGGAAAACAGAAAATTT
TGCTGTCTCTCGTATTCGCATGTGAGGCCAGACTGGTCATATGAAATGAG
GGTGAATTCCAAGGTCTAGATGGGTTTGAATGAAGTGGTTTCTTACAGAT
TCCCAATGCTGTGGAATGTAGAAAAGACAGAAACTCACCTAGATTGGAAG
CCCCAAAGAAGTGTCTCTTTTTTCCCCCACACAGGCAGGGGGCCCAGCTC
AGGGACCTATCACACGTGGCTGCTGATTCGAGATTTCTTTCTCTTCTCCT
TTCAGGTCTTCATAGAGAAGCACAAAGGTGAGATCCTGCGAGTTGTGATT
GTGTAGTCTGGCTGGGGATCCATTCTGCCTACCGTG

Query= MSMg01no299_c09.b1 MSMg01no299_c09.b1 CHROMAT_FILE:
MSMg01no299_c09.b1 PHD_FILE: MSMg01no299_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:59 2005
         (693 letters)



>mm_chr19_24202092_24203184
          Length = 1093

 Score =  996 bits (515), Expect = 0.0
 Identities = 560/575 (97%)
 Strand = Plus / Minus

                                                                        
Query: 118  tcttatctcagcagtctggtgtctgctagactctgggcggtatttagtctacgttggaat 177
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1093 tcttatctcagcagtctggtgtctgctagactctgggcggtatttagtctatgttggaat 1034

                                                                        
Query: 178  ctggctgtaacaacagggggaaatgagctggcctggggaagtgaggacaagcagacacaa 237
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 ctggctgtaacaacaggggaaaatgagctggcctggggaagtgaggacaagcagacacaa 974

                                                                        
Query: 238  atccaaggcttccctcttccatgccctatcacgtgagcttctgctagaagatgtagttca 297
            | ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 973  agccaaggcttccctcttccatgccctatcacgtgagctgctgctagaggatgtagttca 914

                                                                        
Query: 298  gatttagggtatcttttcacctcaaacaatatgattaagaaaattcctcaatagcgtgat 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913  gatttagggtatcttttcacctcaaacaatatgattaagaaaattcctcaatagcgtgat 854

                                                                        
Query: 358  caacagcttgggtttcacctgattgctgatatagtcaagttgacatgcaagattggctgt 417
            ||||||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 853  caacagcttgggttttagttgattgccgatatagtcaagttgacatgcaagattggctgt 794

                                                                        
Query: 418  catatttgtacatataaaaacttaaaacagaaatcttatggactattacttattctgtgt 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793  catatttgtacatataaaaacttaaaacagaaatcttatggactattacttattctgtgt 734

                                                                        
Query: 478  gatggactttgagtttccattgcagtgaaaatttaaaatattgttagaaacacattaaac 537
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733  gatggactttgagttgccattgcagtgaaaatttaaaatattgttagaaacacattaaac 674

                                                                        
Query: 538  caattcaagacccattaatgaattgcgatgcataatttaaggagacaccgttgggctaga 597
            |||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 673  caattcaagacccactaatgaattgtgatgcataatttaaagagacaccgttgggctaga 614

                                                                        
Query: 598  gaggtcactcagtacttaggagtgctcggtattcttccagagggtctgagtttgtttccc 657
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 613  gaggtcactcagtgcttaggagtgctcggtattcttccagagggtctgagtttggttccc 554

                                               
Query: 658  agcacccatgtcaagcagcttacaactgcctgtaa 692
            |||||||||||||||||||||||||||||||||||
Sbjct: 553  agcacccatgtcaagcagcttacaactgcctgtaa 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no299_c09.g1 MSMg01no299_c09.g1 CHROMAT_FILE:
MSMg01no299_c09.g1 PHD_FILE: MSMg01no299_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:59 2005
         (245 letters)



>mm_chr19_24011132_24011776
          Length = 645

 Score =  389 bits (201), Expect = e-112
 Identities = 234/245 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagatgtgaatacaggacttgacctctgtccttacgaagcccacagtccagggcccct 60
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tatagatgtgaatacagaacttgacctctgtccttaagaagcccacagtccagggcccct 260

                                                                       
Query: 61  aaagtagccagtgatgggctggctccaacactgaggaaagacagctgcacttggtgggac 120
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||  ||||
Sbjct: 261 aaagtggccagtgatgggccggctccaacactgaggaaagacagctgcacttggcaggac 320

                                                                       
Query: 121 agaggtcatggcagcttcagcttctctctcccctcacctttctcttcacagagaagtgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 321 agaggtcatggcagcttcagcttctctctcccctcacctttctctgcacaaagaagtgcc 380

                                                                       
Query: 181 ccacacatttatttttcactcagatactgaaaagaatttacagggcaccgtggaacggga 240
           |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ccacacatttattttttactcaaatactgaaaagaatttacagggcactgtggaacggga 440

                
Query: 241 aaacc 245
           |||||
Sbjct: 441 aaacc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)