BAC Information

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BAC

Clone NameMSMg01-299N19
Chromosome19 (Build37)
Map Location 20,439,349 - 20,612,147
singlet/doubletdoublet
Overlap geneAnxa1, LOC100041560, 1500015L24Rik, E030003E18Rik
Upstream geneLOC100042218, LOC100041541
Downstream geneEG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299N19.T7 (MSMg01no299_n19.b1)MSMg01-299N19.TJ (MSMg01no299_n19.g1)
ACCAG426517AG426518
length729732
length of high quality
(start - end)
313 (48 - 360)282 (79 - 360)
definitionCHROMAT_FILE: MSMg01no299_n19.b1 PHD_FILE: MSMg01no299_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:54 2005CHROMAT_FILE: MSMg01no299_n19.g1 PHD_FILE: MSMg01no299_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,439,349 - 20,439,657)(20,611,866 - 20,612,147)
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGAATCTTTAAGTGAAGATAGAAAAGAGCCAATAAATACATA
TAAGGTATAGACCATCCGTAATGGTCTGGGAAATGCCGTGTTCCTTCGAA
TCCATTAAATCACAATAGAGAAAGAAGAATCAATGGGCGACTTGTGATCA
ACTGAGCATGAGCAGCTGGGCATCCGTGTAAAGGGTTTTCTCAACTGGGT
CACTTGAAATGGTCAGCCCCACCCTAATCGTAACCACACAGACCTGCTGG
TGGCCACCTGCAGAAAAGAACACTGGAAAGGGAAGCCTGCGCATTTGGCT
GCTTGCCCTGTTATTTTCTTAGAAAGCCCCCCCTACCCTGTCTGACCCGA
GGNATTCGNTTGCTTTGCTCATGCTGGAACCTATTTCTTCAGGATTCCAA
TGTAGACCCATGACAAGCAGCCGTCGAGGACTTCTCCGGGATTTTAGGAC
CAGGTTAGACAAGGATGTGGGATTGCTAGATCCTGGGCCTTTGCTTCAGA
AGACAGCCATTGTTGGACTACTTAGACACAGCCTGTAAACCACTACAATC
AATTCCGTTTTAATATAGATATACTATCAGTTCTGTTCCCCAGAACCCTT
ACTAGCACACTCGGCTAGCTTTCGTATATATTCCAGAACCAACTGCCTAG
AGATGGTATGGCCTCTGGTGAGCTGAGCC
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGAAGTTAGTGATTACCAC
ATAGAGAAAGTAATTCTCTGAATGGCAGTTTAATTATGAATTCCTTCCAC
CTTATCCCTCTCCAGTTGCCTTCTCTCCACCACCTTCTTTCCTTCCTTCC
ATTTTACTCTGGTTCCCTCCCTCCCTTTCCATTTCCTCTTTTAATCTCTC
ATCTGGTGATGATCAATCAGGGGAACAACAGGCTAGAGCAGTAGCTCACC
TGTTAACAGCATTTCCTGCTTTTGTACAGAACCTGAGGGTTTCTATTCCC
ACATCAGATGTTCTTTGTTTCCTGACCCTCCAGCTCCATGTGATCTGATA
CCCTCCTCCTTCTTGCAACCACATGAACATAAGAGGCTCGCAGGAGGAGA
CACATAAATAAAAATAAAAAATAAGTGATTACTTGTGTTTTATACATGTT
TTGCAGGAGCAGACATTCTAACTAAATCATCAGTGGGGAGAGATTTCATT
GAGTGTGGGTAGAGACATGAACATCTGGGCTAGAGTCTGAAGAAAATGGT
GAGAATATTAACTGTCACAGATGGAACTCTTGAGCGCATACATAAGACAT
TAACTGAGAATTTCTTGGACTAGAAAAATAAATTGGAATTAAATATATTC
TTTCTTAACAAATATCACATGTAAAATCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_n19.b1 MSMg01no299_n19.b1 CHROMAT_FILE:
MSMg01no299_n19.b1 PHD_FILE: MSMg01no299_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:54 2005
         (313 letters)



>mm_chr19_20439145_20439857
          Length = 713

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgaatctttaagtgaagatagaaaagagccaataaatacatataaggtataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgaatctttaagtgaagatagaaaagagccaataaatacatataaggtataga 264

                                                                       
Query: 65  ccatccgtaatggtctgggaaatgccgtgttccttcgaatccattaaatcacaatagaga 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatccgtaatggtctgggaaataccgtgttccttcgaatccattaaatcacaatagaga 324

                                                                       
Query: 125 aagaagaatcaatgggcgacttgtgatcaactgagcatgagcagctgggcatccgtgtaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagaagaatcaatgggcgacttgtgatcaactgagcatgagcagctgggcatccgtgtaa 384

                                                                       
Query: 185 agggttttctcaactgggtcacttgaaatggtcagccccaccctaatcgtaaccacacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggttttctcaactgggtcacttgaaatggtcagccccaccctaatcgtaaccacacag 444

                                                                       
Query: 245 acctgctggtggccacctgcagaaaagaacactggaaagggaagcctgcgcatttggctg 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 acctgctggtggccacctgcagaaaagaacacaggaaagggaagcctgcgcatttggctg 504

                    
Query: 305 cttgccctg 313
           |||||||||
Sbjct: 505 cttgccctg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no299_n19.g1 MSMg01no299_n19.g1 CHROMAT_FILE:
MSMg01no299_n19.g1 PHD_FILE: MSMg01no299_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:54 2005
         (282 letters)



>mm_chr19_20611746_20612427
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggaagttagtgattaccacatagagaaagtaattctctgaatggcagtttaattatg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tttggaagttaatgattaccacatagagaaagtaattctctgaatggcagtttaattatg 343

                                                                       
Query: 61  aattccttccaccttatccctctccagttgccttctctccaccaccttctttccttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aattccttccaccttatccctctccagttgccttctctccaccaccttctttccttcctt 283

                                                                       
Query: 121 ccattttactctggttccctccctccctttccatttcctcttttaatctctcatctggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccattttactctggttccctccctccctttccatttcctcttttaatctctcatctggtg 223

                                                                       
Query: 181 atgatcaatcaggggaacaacaggctagagcagtagctcacctgttaacagcatttcctg 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 222 atgatcaatcaggggaacaacaggctagagcaatagctcacctgttaacagcatttcctg 163

                                                     
Query: 241 cttttgtacagaacctgagggtttctattcccacatcagatg 282
           |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 162 cttttgcacagaacctgagggtttctattcccacatcagatg 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)