Query= MSMg01no300_j11.b1 MSMg01no300_j11.b1 CHROMAT_FILE:
MSMg01no300_j11.b1 PHD_FILE: MSMg01no300_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:47 2005
(322 letters)
>mm_chr19_60756970_60757691
Length = 722
Score = 547 bits (283), Expect = e-160
Identities = 307/315 (97%)
Strand = Plus / Plus
Query: 5 gaattcaatcacatgtctccagagactataagagagactgaagaaacagagctcatccca 64
||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcacatggctacagtgactataagagagactgaagaaacagagctcatccca 264
Query: 65 agcaacttagttcctccctaaaatttggatgtatagaaacagcaaaggtttgataaagag 124
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaacttagtccctctttaaaatttggatgtatagaaacagcaaaggtttgataaagag 324
Query: 125 ggacaattgaaaatgtttgttgttgtcttctttctgaaggagttgggctcaagaaagact 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggacaattgaaactgtttgttgttgtcttctttctgaaggagttgggctcaagaaagact 384
Query: 185 ttaaatacttattatccaatagctcttctatattccccttaccagtgctacttcctatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaaatacttattatccaatagctcttctatattccccttaccagtgctacttcctatat 444
Query: 245 agcattcagggttggcttttccctactgcaatgagggaaggtttgtatttcagcagtagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 agcattcagggttggcttttccctactgcaatgagggaaggtttgtatttcagcagtggc 504
Query: 305 tataaccttgagaat 319
|||||||||||||||
Sbjct: 505 tataaccttgagaat 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_j11.g1 MSMg01no300_j11.g1 CHROMAT_FILE:
MSMg01no300_j11.g1 PHD_FILE: MSMg01no300_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:47 2005
(283 letters)
>mm_chr19_60917889_60918572
Length = 684
Score = 511 bits (264), Expect = e-149
Identities = 279/286 (97%), Gaps = 5/286 (1%)
Strand = Plus / Minus
Query: 1 acaagttgctctatctaactggtcaatgtcccattccctgagtag---accacctcaccc 57
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 484 acaagttgctctatctaactggtcaatgtcccattccctgagtagataa--acctcaccc 427
Query: 58 agagcttagtccatgtgccttttagagcctgctggtaggtggttgtgcagtgatccaggc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agagcttagtccatgtgccttttagagcctgctggtaggtggttgtgcagtgatccaggc 367
Query: 118 atatgcctgtaactgcatgcagagccaaatcagccaccactgaaacagagggcctgcttc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atatgcctgtaactgcatgcagagccaaatcagccaccactgaaacagagggcctgcttc 307
Query: 178 agaaaagaggacaaaagcgttggactgcgtgtgagctatgccttgtctcttacaggacga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agaaaagaggacaaaagcgttggactgcgtgtgagctatgccttgtctcttacaggacga 247
Query: 238 ggttttactcatagactctgctgtcactcgtgatcctgagaatgag 283
|||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 246 ggttttacccacagactctgctgtcactcgtgatcctgagaatgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
