Query= MSMg01no301_m22.b1 MSMg01no301_m22.b1 CHROMAT_FILE:
MSMg01no301_m22.b1 PHD_FILE: MSMg01no301_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:18 2005
(608 letters)
>mm_chr19_17481672_17482679
Length = 1008
Score = 1122 bits (580), Expect = 0.0
Identities = 604/620 (97%), Gaps = 16/620 (2%)
Strand = Plus / Plus
Query: 1 gtgaactt----aggtaggtttggtcttttcccacagaacctaaagggcttttcaaacta 56
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtgaacttagccaggtaggtttggtcttttcccacagaacctaaagggcttttcaaacta 256
Query: 57 tgcaatctgaaatcaaattagcatggagtaacttcaaggatagcatgtgatgtaatactc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgcaatctgaaatcaaattagcatggagtaacttcaaggatagcatgtgatgtaatactc 316
Query: 117 tagtgtggataagtactgtctgctcatcctcttgcttcggtttttaagtttggtgtgaaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tagtgtggataagtactgtctgctcatcctcttgcttcggtttttaagtttggtgtgaaa 376
Query: 177 gtccctgttttaatttgctcttgtgctggtggtcaagggattagacagctccaacatgga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtccctgttttaatttgctcttgtgctggtggtcaagggattagacagctccaacatgga 436
Query: 237 gattaggaacagggtctgtggaaccgattgaattctctgcaaacctgggaaagttactct 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gattaggaacagggtctgtggaaccgattgaattctctgcaaacctgggaaagttactct 496
Query: 297 tctgtgacttgtgtcatggtcacaaagcaggacaacagtggtgcttacctcatagtttca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctgtgacttgtgtcatggtcacaaagcaggacaacagtggtgcttacctcatagtttca 556
Query: 357 agggcaattaaggaataaatgagttgattcatcctaatgcagccaagagaacctgaaaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agggcaattaaggaataaatgagttgattcatcctaatgcagccaagagaacctgaaaaa 616
Query: 417 gagaatgtgctcaacccatgtcactgctactgttttgacagtggtggcgtttctcctgat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gagaatgtgctcaacccatgtcactgctactgttttgacagtggtggcgtttctcctgat 676
Query: 477 ggccaaagacctgagactttaaaggcacaatcctctctagattatccacagggaacctct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggccaaagacctgagactttaaaggcacaatcctctctagattatccacagggaacctct 736
Query: 537 gttttttgttttttgtttttgtttgtttgtttgtttgtt----cgttcgtttgtttgttt 592
||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 737 gttttttgttttttgtt----tttgtttgtttgtttgtttgttcgttcgtttgtttgttt 792
Query: 593 tttt----agatgttacagt 608
|||| ||||||||||||
Sbjct: 793 ttttttttagatgttacagt 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_m22.g1 MSMg01no301_m22.g1 CHROMAT_FILE:
MSMg01no301_m22.g1 PHD_FILE: MSMg01no301_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:18 2005
(294 letters)
>mm_chr19_17649199_17649892
Length = 694
Score = 563 bits (291), Expect = e-165
Identities = 291/291 (100%)
Strand = Plus / Minus
Query: 1 tgttacaaaatggaagaactggggtatagcaaagaaaggtcagaccaagaacaagaggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgttacaaaatggaagaactggggtatagcaaagaaaggtcagaccaagaacaagaggcc 242
Query: 61 tatcacaaagactatgtctagaccaattgataccaattttctgtattagttgcttttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatcacaaagactatgtctagaccaattgataccaattttctgtattagttgcttttctc 182
Query: 121 tggctgtgacaaaatgcctatcaaaagcaaattaaagagctggttgttttgactcaaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggctgtgacaaaatgcctatcaaaagcaaattaaagagctggttgttttgactcaaatg 122
Query: 181 cacactgaagggatatggttcatcacggtgctgtaggcatggtgggaaaagcatgaggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacactgaagggatatggttcatcacggtgctgtaggcatggtgggaaaagcatgaggta 62
Query: 241 actgaccatgctgagtcagcagatcaacattgactcagatcagtgtgggtg 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actgaccatgctgagtcagcagatcaacattgactcagatcagtgtgggtg 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
