Query= MSMg01no301_p23.b1 MSMg01no301_p23.b1 CHROMAT_FILE:
MSMg01no301_p23.b1 PHD_FILE: MSMg01no301_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:31 2005
(335 letters)
>mm_chr19_51287993_51288728
Length = 736
Score = 530 bits (274), Expect = e-155
Identities = 316/330 (95%), Gaps = 3/330 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaagctaataaagaaaaatagtttctactacatgggtagacatgcaatgtcaa 64
||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcagaaggtaatagagaaaaatagtttctactacatgggtagacatgcaatgtcta 264
Query: 65 ctcctagtgtgccagttcttgaaattatagattattgataataagtactg-tttccctcc 123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 ctcctagtgtgccagttcttgaaattatagattattgataataagtactgctttccctcc 324
Query: 124 atctgaaagaatgatctttataaaaatacataaaaagctgtttttgtaacacatatccat 183
||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 325 atctgcaagaacgatctttataaaaatatataaaaagctgtttttgtaacacatatccat 384
Query: 184 tcaacatctttcattcaacaag-cagacatttgcttctgatggaattttttttcacataa 242
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaacatctttcattcaa-aaggcagacatttgcttctgatggaattttttttcacatat 443
Query: 243 catatttcagacctaggagttaatgctactcagttctgtcatcttattcaaatatgaaaa 302
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 catatttcagacctatgagttaatgctactcagttctttcatcttattcaaatatgaaaa 503
Query: 303 ggctttatgtacatatcttattttttacta 332
|| |||||||||||||||||||||||||||
Sbjct: 504 ggatttatgtacatatcttattttttacta 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 736
Length adjustment: 9
Effective length of query: 326
Effective length of database: 727
Effective search space: 237002
Effective search space used: 237002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no301_p23.g1 MSMg01no301_p23.g1 CHROMAT_FILE:
MSMg01no301_p23.g1 PHD_FILE: MSMg01no301_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:32 2005
(641 letters)
>mm_chr19_51435261_51436301
Length = 1041
Score = 750 bits (388), Expect = 0.0
Identities = 430/460 (93%), Gaps = 28/460 (6%)
Strand = Plus / Minus
Query: 1 agagtaaatctctgactactcttctttgtttgcctcttcatggttaagcagaagagacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agagtaaatctctgactactcttctttgtttgcctcttcatggttaagcagaagagacta 406
Query: 61 cattttaggagtgtgagctaaactacccatctgccattgtccatatgtcaagcaatcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cattttaggagtgtgagctaaactacccatctgccattgtccatatgtcaagcaatcctt 346
Query: 121 tactgtcctacagaatttgcagagaacttagaattcaaggttcatctctcttgttatatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tactgtcctacagaatttgcagagaacttagaattcaaggttcatctctcttgttatatc 286
Query: 181 tgtcattaagaacttcaagtttaggattcttcaagttatgtaaacatatatttgatgtct 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 285 tgtcattaagaacttcaagtttaggattcttcaagttatgtaaacatatatttgatatct 226
Query: 241 ttcttgtaaatcccacagctttactttccttccttccttccttccttccttcct------ 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ttcttgtaaatcccacagctttactttccttccttccttccttccttccttccttccttc 166
Query: 295 ------cctttcctccctcccttgcttctttccttcctccctccctcacttctttccttc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cttcctcctttcctccctcccttgcttctttccttcctccctccctcacttctttccttc 106
Query: 349 ctccttccctcacttccttccctccttcc----ttccttccttcct-cc----------- 392
||||||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct: 105 ctccttccctcgcttccttccctccttccctccttccttccttccttccttccttccttc 46
Query: 393 ctccctccctccctccctcgcttctttccttcctccctcc 432
||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ctccctccctccctccctcgcttctttccttcctccctcc 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 123
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
