BAC Information

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BAC

Clone NameMSMg01-302K08
Chromosome19 (Build37)
Map Location 21,454,758 - 21,455,049
singlet/doubletsinglet
Overlap genenone
Upstream geneAnxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5
Downstream geneGda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229, Trpm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302K08.T7 (MSMg01no302_k08.b1)MSMg01-302K08.TJ (MSMg01no302_k08.g1)
ACCAG428476AG428477
length734756
length of high quality
(start - end)
319 (45 - 363)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no302_k08.b1 PHD_FILE: MSMg01no302_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:20 2005CHROMAT_FILE: MSMg01no302_k08.g1 PHD_FILE: MSMg01no302_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCCCAGACATGAGAGTCCTCCCTAGGCATGAGAATTCTCCCCAGA
CATGAGTCCTCCCCAGATATGAGCCCTCCCCAGACATGCAGTCTGTAGGA
ACCTTAGTCTGGGACTTGTAACTTGCAGATGCAGGAGAAAATAACTATGA
TGTCAGCCCACATCAGCCTGTGGTATCTATCAGACAGCCCGAGCAGGTGA
TGAAATGCAGTCTTAAGTGCTCTCGTATGTTAACGTTGCTAGGTAGGAGT
GGCTTTAAATTTGGAGGTACAGAGGACATTAGAGATGAAGTGTTAGGTCG
ATGCAAGTACTAGACTTGAGTGTACTACAGATCACCTCATTCAGATGGAG
GGCACAGAAAGGGCTGTGTTCCTGGCTATAGAACGAGCTAGAAATAGAAA
AGCTATCCTTAGAAGAGAACATTGTTCATGGTGCTGCATGTACCATTAAA
AAGCAGAAGACCACACACACACACACACACACACACACACACACACACTC
ACACACTCAAATTTACCATGAAAATTATCTAGACGCAAAATTTATACATC
CCAATGAACTTCTATATTGTTAGATTAGTCATTCTGAAGTTGTGGAACTT
CATGCCAAATTTTATACTTTCATTATCACTTTTTTCACTTATCTGGTTAA
TTTTACTGTGTGATTTTTTCCCTAATTTTGCAAN
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATACATTTACAATGACAGTGCACAG
TAGGGACATGGCTAGAGAAAGACTCGATGCCTGACTTGGTGGGGAAAAAT
GCATTACTCCTTAAAAGGTCATTTTATTAATTTAAAGAACAGAGAATCCT
TCCCCTTTATCTATTTTTTCATTAAAATGTTTATACAATAGATTTTGATC
ATATTCTTTCCCCTCTCCCAACATCCCTGATCTTCCCCCACCTCCATTCC
CACCCAACTTCTTGTTCTTTCTCTCATTAAGAAAAAGGAAATGATAAAAA
AAAAGAAAGCCAATTTAATTAATTCCCAANACAANCCCGTGGAGTTCATT
CGCTGTTGGCTAACTACTCCTGTACTCAAAAAAAAAAGACCTGCCCTGGA
GGATGTTTGATATGACTGAAAGGATAAAGGGTGACATAAACCCATTTGTC
TCCATTTCATGACTGGGACTGATTTTTTTTTTGAGATTATAAATTTTTTA
TTAAATATTTTCTTCCTTTGCATTTCAAATGCTTATCCGAAAGTCCCCTA
TACCCCCCCCACCCTGTTCCCCTAACCAACTCACTCCCCACTTTCTTGTT
CCCTGGTGGTTCCCCTTGCTACTGGGTGGTAAATAAAGGTTTGGCAAGAA
ACAAAGGGGGCCTTCTCCTTTCTCCATTGTATGGGCCGAACAAATGCTCA
TTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_k08.g1 MSMg01no302_k08.g1 CHROMAT_FILE:
MSMg01no302_k08.g1 PHD_FILE: MSMg01no302_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:20 2005
         (290 letters)



>mm_chr19_21454558_21455247
          Length = 690

 Score =  514 bits (266), Expect = e-150
 Identities = 285/292 (97%), Gaps = 2/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatacatttacaatgacagtgcacagtagggacatggctagagaaagactcgatgcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatacatttacaatgacagtgcacagtagggacatggctagagaaagactcgatgcctg 260

                                                                       
Query: 61  acttggtggggaaaaatgcattactccttaaaaggtcattttattaatttaaagaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttggtggggaaaaatgcattactccttaaaaggtcattttattaatttaaagaacaga 320

                                                                       
Query: 121 gaatccttcccctttatctattttttcattaaaatgtttatacaatagattttgatcata 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatccttcccctttatctatttttccattaaaatgtttatacaatagattttgatcata 380

                                                                       
Query: 181 ttctttcccctctcccaacatccctgatcttcccccacctccattcccacccaacttctt 240
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 381 ttctttcccctctcccaacatccctgatcttcccccacttccattcccacccgacttctt 440

                                                               
Query: 241 gttctttctctcattaagaaaaaggaaatgataaaaaaaaa--gaaagccaa 290
           |||||||||||||  ||||||||||||||||||||||||||  |||||||||
Sbjct: 441 gttctttctctcaaaaagaaaaaggaaatgataaaaaaaaaaagaaagccaa 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)