BAC Information

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BAC

Clone NameMSMg01-303A05
Chromosome19 (Build37)
Map Location 20,499,258 - 20,499,490
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
Downstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303A05.T7 (MSMg01no303_a05.b1)MSMg01-303A05.TJ (MSMg01no303_a05.g1)
ACCAG428730AG428731
length633717
length of high quality
(start - end)
276 (39 - 314)233 (81 - 313)
definitionCHROMAT_FILE: MSMg01no303_a05.b1 PHD_FILE: MSMg01no303_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:47 2005CHROMAT_FILE: MSMg01no303_a05.g1 PHD_FILE: MSMg01no303_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCT
CACCTGAGGCATATCAAATGGCTGAGAACACCTGATAAAATGTTCAACAT
CCTTAATCATCAGGGACATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACATCATCAAAATGGCTAAGATCAAAAATTCAGNGGACAGCAGATGCTGG
CTAGGATGGGAAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGC
TTGTACAACCACACTGGAAATTAGTCTAGCGTTTTCTCAGAAAATTGGAC
TAGTACTACCAGAGATCCTGCATACTCTCTGGNCTATATCAGAAGTGTTC
CACCGGGAAAAAAAGAAAAAAGGTCCCCTTAGGTTCAAAAANNACCAATT
GCCNCCGTAGCCCCCTTTATCTTCCTATTTTTTNATTATTTTTAAAAAAA
NCCTGTCTTTATAAAATAAAGGGGCCCNCTGCCAAAAAAAAANNNNNNTN
CAGCTTTAGCATATAAACCCGCACCCTAAACCTTTNTCAAAAAACNNNAA
AAAAAAAAANNCTAGGAGTAGGAAAAAAGCCTTTCNTTAGCAAACAACCT
CTCCTATAACACCTAAAAAATNTTCCATTTTAG
NNNTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCAATGAAAATGTATA
TATGTAATAAATGATCCAACATTAAAATGTCTTTTCCTCTATCTGCCTCC
AAACCATTCAGCACAGTAGAGCAGGTTCGTCGCACCTGTTGCTCTTCCTC
TCTTCTCCCACCCATCTCTCCTGCTCTGTCCTTTCACCTCTATGTTTTGC
TTTTGCAGTGGCTCCTGACCAAGAGAAGCCAATACAAGGAGATGGGCCTG
AGCTCCTGAATATTTAAAATATTAATTTTTCCTTCCCACACATTACTCAG
GAGACCAAGGACTCCATGGCCCAAAACAAAACAAAACAAACAAACAAACC
AAAAACAAAAGGTAAGAATTTGTGAATATTTGGCTGACATTTTTCCTGAA
CGTTATGAAGGATCACATATTTAAAAGACTAACATGTTCCAAGGTATTGA
AGAAATAGAAACAGAATAGNCTCCTTGTTAGTTTCCATATTCTTAAGACA
CACCTGAACTTCTTGGGTTGTTTTGGTTGTTGAAAGATTCTGTTTGGAAT
AAACTGGAGACTACTGTAAATTTCACATAGTACTTAGTCACATTATTTCC
TGCTCTGGGGTTTAAAGGGGAGGATTTGGTGGGTCAGCATTCTCTTTGTT
GGAAACTATGCTTAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_a05.g1 MSMg01no303_a05.g1 CHROMAT_FILE:
MSMg01no303_a05.g1 PHD_FILE: MSMg01no303_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:48 2005
         (233 letters)



>mm_chr19_20499058_20499690
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttccaatgaaaatgtatatatgtaataaatgatccaacattaaaatgtcttttcctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttttccaatgaaaatgtatatatgtaataaatgatccaacattaaaatgtcttttcctct 374

                                                                       
Query: 61  atctgcctccaaaccattcagcacagtagagcaggttcgtcgcacctgttgctcttcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atctgcctccaaaccattcagcacagtagagcaggttcgtcgcacctgttgctcttcctc 314

                                                                       
Query: 121 tcttctcccacccatctctcctgctctgtcctttcacctctatgttttgcttttgcagtg 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 313 tcttctcccacccatctctcctgctctgccctttcacctctatgttttgcttttgcagtg 254

                                                                
Query: 181 gctcctgaccaagagaagccaatacaaggagatgggcctgagctcctgaatat 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gctcctgaccaagagaagccaatacaaggagatgggcctgagctcctgaatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)