BAC Information

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BAC

Clone NameMSMg01-304E08
Chromosome19 (Build37)
Map Location 49,679,650 - 49,680,380
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1, EG433251, Sorcs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304E08.T7 (MSMg01no304_e08.b1)MSMg01-304E08.TJ (MSMg01no304_e08.g1)
ACCAG429608AG429609
length1,3571,407
length of high quality
(start - end)
741 (85 - 825)72 (95 - 166)
definitionCHROMAT_FILE: MSMg01no304_e08.b1 PHD_FILE: MSMg01no304_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:41 2005CHROMAT_FILE: MSMg01no304_e08.g1 PHD_FILE: MSMg01no304_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAGTTTNNNNNNNCCATTGGGCGNTAAGACTCCANAGGGAGAGGATC
CGCGGAATTCATTGCTTACACTCAGACGTGTAGTTCATTCCCATTTCTAT
CTTTCTGAGGAATCATTCTTATCTCCCCATGCCTTTAAACTCAGTTATCA
TTAGAATGTTCACCAAGAAGGCAGTGTGTCTAGGAGCATCAGTGAGCAGC
CCAAAGTATGAAGTCATATAACAAACTCCACTTGAAAACCTTCCTTGCCA
GACTCTATTCACCTTTTTATTCCACAATGCTGGTGAGATTTTTTCTATCT
GTTTACCTAAATCAATCAGAAAAGGCATCTTTTCAGTCCTCGGTTAGAGA
GGTTTTTTTTTTTTTTTTTTTTCGGGTTTGTGTTACATGAGAATAATATT
ATTTTTGTCTAGAGCCATAAAAATTTGGATACTACATTCTGAATCCCTAA
TACAGTGTAGATACTGACATTTAAGTACTTAAAATTGAGAACCTGAGGGG
GTCCCCTGCAGTAAAGTGCTTGCCTTGAAAGCATGGATATCCATCCACTC
AGGTCTGATCCCTAGAACCTATAGAATTATAACAGAAGAAAAGATTCTAG
TGTTGTATGCTGGTTATAATGGAGTGCAGTGCTGGTGAGTCAGAGGCAGG
TAGAACTCTAGGATCACTTGCCAAATAGTCTACCTGACTGGCAAGCTCTA
GGCCAGTGAAAGATCCTAGATTGAAACTGTACAATGGAGAGAGTACCTGA
ATAAATGACAGTCACTAGGCACATGCCCCACTCCCACAGGAGCACAAATG
GAAGGCACTAATGTACAAATATGCATTTACATAAGTAAACAACTCTAAAT
GTCATCAGTGNCAAGTCATGAAGTGGTCCTTTTATGCTGTGTCTGTTGGC
ATTGGGAATATTCTAGTACAAATTCCATAATCCTCTTACAGGGGAAAAAA
TCCTGTCGGGAATTTCCTAATTCACATTGTGCCAAATAAAACGGTTTCTT
CCTTTGAATAATTAATGGAAAAAATTTCCTCTTTTTTCTTTGCAAAATGG
TTTCTTTGTTTAAAAATAAAAAAACACTGGTTTTTTTTTTTTTTCCTATA
TTCTTCCTCAATTCTTAAGTTTCTTTTATTATAATTTTTTTTTTATTTTT
TCATTATATAATTAAATAGTTCTTATTTTATACCTATATCTTTTTTTTTT
AAATTAATATACTCATTGTCTTTATAGCTTCTCTATATATATATCCATTG
ATTATTTCTAATATCCATAATTTATCTCTCATATACAACACTTTCTATTA
ATTCACTTCATTTCGATTTATTTATATACTTTTCTTCAACTATTTTCTAN
TATTTTT
NNCCATCTCTNNNNNNNATGCAAGTGAGGCTGGGGXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTAAACTTCCAAAGATA
CATGTAAATCAGATCACTGGAACCTATTCAATTTGCATTTACCTCAGAGT
GCCTGTATGGAACCAAAATCCAAGACACTGGCTTNNNTAGACAGATTCCA
TCTGGTATGAACACATTCTGANNAGATAAATTATGCAATAATGACTANTA
TTAGAATTGTTCTATCACATAATTGTAATTTGNAAAGNNNNNTATCTANN
ANTTCCCCACCTCTTAACTAANNNNNNNGATTGATANNNNNNNCGAATGT
CTATTTGGNACTCGTATTGAAGATCTNNNNNNNNNNNNNTTCCCCNNNNN
NNNNNNNNNNNTTAAATANNNAGGTATGAAGNNNNNNNNNTNNTGAAAAA
AAAACNNNNNNTCNNNAAAAAAAAAACAACAAATATAAAANNNNNNNNNN
NNNNNNNNNNNCGNNNNNAAAAATAATCCCTCGTTGTTGGACCCCNNNNN
NNNNNNACAATTTTTTAATTTTAAAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCNNNN
NANNNNNNNNNNNTGATCTACCAAAGTGAATTAAAAGNNNNNNAAAATAA
AAAATGAATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNT
NNNNNGGGTTTATAATATAAATGTATTTTGATTGGGNNNNNNACCCCNNN
NNNNTATTTTTTTATATTATTATTAGNTGTGTGGTGGGGAAATAAATTTA
TAAAATAAAGNNNTTTTATTTTATAAAGAGAGGTGGGGGNNNTNTGNTTT
TTTTTTTTTATTTCCCCNNNNNNNNNNNNNNNNTCCCACTCCACCGNNNN
NNNGGGNNNTAATCCCACCCCACAAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGAAGCCCCCTCCCCCTCCATATNNNNNNNNNNNN
NNNNNNNNNNNNNNNTNNCTNNNNTNNNNTTNNTNNNTTCTCCTTANNTA
TNTNTTCCTTTNTTCTCCTCTACTNTTTCTTTCTCTCTACCTACCTTNAN
NTCCTATCTCTTCTATCCTCCCCCCCCCTTCTTACTCCTCACTACGTTCT
ACTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_e08.b1 MSMg01no304_e08.b1 CHROMAT_FILE:
MSMg01no304_e08.b1 PHD_FILE: MSMg01no304_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:41 2005
         (741 letters)



>mm_chr19_49679476_49680616
          Length = 1141

 Score = 1290 bits (667), Expect = 0.0
 Identities = 718/739 (97%), Gaps = 8/739 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   attcccatttctatctttctgaggaatcattcttatctccccatgcctttaaactcagtt 62
           ||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||
Sbjct: 905 attcccatttctatcttcctgaggaatcattgttgtctccccatgcctttaaactcagtt 846

                                                                       
Query: 63  atcattagaatgttcaccaagaaggcagtgtgtctaggagcatcagtgagcagcccaaag 122
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 845 atcattagaatgttcaccaagaaggca-tgtgtctaggagcatcagtgagcagcccaaag 787

                                                                       
Query: 123 tatgaagtcatataacaaactccacttgaaaaccttccttgccagactctattcaccttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tatgaagtcatataacaaactccacttgaaaaccttccttgccagactctattcaccttt 727

                                                                       
Query: 183 ttattccacaatgctggtgagattttttctatctgtttacctaaatcaatcagaaaaggc 242
           |||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 726 ttattccacaatgctggtgaaattttttctatctttttacctaaatcgatcagaaaaggc 667

                                                                       
Query: 243 atcttttcagtcctcggttagagaggttttttttttttttttttttcgggtttgtgttac 302
           ||||||||||||||||||||||||||        |||||||||||||  ||||||||| |
Sbjct: 666 atcttttcagtcctcggttagagagg-------gttttttttttttcatgtttgtgtttc 614

                                                                       
Query: 303 atgagaataatattatttttgtctagagccataaaaatttggatactacattctgaatcc 362
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 613 atgagaataatattatttttgtctagagccataaaaatttggatgctacattctgaatcc 554

                                                                       
Query: 363 ctaatacagtgtagatactgacatttaagtacttaaaattgagaacctgagggggtcccc 422
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 553 ctaatacagtgtagatactgacatttaagtacttaaaatcgagaacctgagggggtcccc 494

                                                                       
Query: 423 tgcagtaaagtgcttgccttgaaagcatggatatccatccactcaggtctgatccctaga 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 493 tgcagtaaagtgcttgccttgaaagcatggatatccatccactcaggtctgatctctaga 434

                                                                       
Query: 483 acctatagaattataacagaagaaaagattctagtgttgtatgctggttataatggagtg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acctatagaattataacagaagaaaagattctagtgttgtatgctggttataatggagtg 374

                                                                       
Query: 543 cagtgctggtgagtcagaggcaggtagaactctaggatcacttgccaaatagtctacctg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cagtgctggtgagtcagaggcaggtagaactctaggatcacttgccaaatagtctacctg 314

                                                                       
Query: 603 actggcaagctctaggccagtgaaagatcctagattgaaactgtacaatggagagagtac 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actggcaagctctaggccagtgaaagatcctagattgaaactgtacaatggagagagtac 254

                                                                       
Query: 663 ctgaataaatgacagtcactaggcacatgccccactcccacaggagcacaaatggaaggc 722
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctgaataaatgacagtcactaggcacatgccccactcccacaggagcacaaatggaaggc 194

                              
Query: 723 actaatgtacaaatatgca 741
           |||||||||||||||||||
Sbjct: 193 actaatgtacaaatatgca 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 1141
Length adjustment: 10
Effective length of query: 731
Effective length of database: 1131
Effective search space:   826761
Effective search space used:   826761
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)