Query= MSMg01no304_i11.b1 MSMg01no304_i11.b1 CHROMAT_FILE:
MSMg01no304_i11.b1 PHD_FILE: MSMg01no304_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:17 2005
(691 letters)
>mm_chr19_20483775_20484865
Length = 1091
Score = 1313 bits (679), Expect = 0.0
Identities = 688/691 (99%)
Strand = Plus / Plus
Query: 1 ctatggatattgaagctggctacagagagggtcaaacaatctatgttataaaacaggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatggatattgaagctggctacagagagggtcaaacaatctatgttataaaacaggaat 260
Query: 61 gaaaggcctgtccttatgaaaacagacagaaataaaaacaaaagtatcagaaaaaattgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaggcctgtccttatgaaaacagacagaaataaaaacaaaagtatcagaaaaaattgc 320
Query: 121 caaagacggtgtaagatcagaaatgtcactgctaaggtgaagaaagcaagagagacaaca 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagatggtgtaagatcagaaatgtcactgctaaggtgaagaaagcaagagagacaaca 380
Query: 181 gcttgggattctgtaagtgaggtgtgttaacactggtgcctggaagatctgcagtgcccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgggattctgtaagtgaggtgtgttaacactggtgcctggaagatctgcagtgcccc 440
Query: 241 atgagtgtttcctctgggtctaaactgccaaggcacttcctgtgtggttaacatagaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagtgtttcctctgggtctaaactgccaaggcacttcctgtgtggttaacatagaaat 500
Query: 301 aattatacaacacgacttggggtttcaaaagcaggaacacccaaagcagaagcaccatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattatacaacacgacttggggtttcaaaagcaggaacacccaaagcagaagcaccatat 560
Query: 361 tctgtttgctctcagatcctggaattccaaagcagatgaaacactttaaaagctatactg 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tctgtttgctctcagatcctggaattccaaagcggatgaaacactttaaaagctatactg 620
Query: 421 accatttagtaagggctccattgtcaagccaggaagcttgcttgagtgagaaagtgaagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accatttagtaagggctccattgtcaagccaggaagcttgcttgagtgagaaagtgaagt 680
Query: 481 tagtggcttcgttccaacctccaagtaaaagcaaatgtcagaagaaaccggaagtcaggg 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 tagtggcttcgttccaacctccaagtaatagcaaatgtcagaagaaaccggaagtcaggg 740
Query: 541 ccagtcaaaggagaggtggcctgatttagtcaacgaactaaaattaagtatttctttgaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccagtcaaaggagaggtggcctgatttagtcaacgaactaaaattaagtatttctttgaa 800
Query: 601 gttattatatcactcttcaaatgaaatcatttggttggaacactcagaaatttaaagcca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttattatatcactcttcaaatgaaatcatttggttggaacactcagaaatttaaagcca 860
Query: 661 tctttttgctaacagcatatccactttgatt 691
|||||||||||||||||||||||||||||||
Sbjct: 861 tctttttgctaacagcatatccactttgatt 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_i11.g1 MSMg01no304_i11.g1 CHROMAT_FILE:
MSMg01no304_i11.g1 PHD_FILE: MSMg01no304_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:17 2005
(785 letters)
>mm_chr19_20661718_20662904
Length = 1187
Score = 1423 bits (736), Expect = 0.0
Identities = 774/788 (98%), Gaps = 4/788 (0%)
Strand = Plus / Minus
Query: 1 tcctgagggaaggggttcaatgaagacatttcctttaagactgaattttccaaaattttc 60
||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 987 tcctgagggaaggggtttaatgaagacatttcatttaggactgaattttccaaaattttc 928
Query: 61 tcactgtctggaagttgtccgatagtgagtctctatataagtcgaatctacttctagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 tcactgtctggaagttgtccgatagtgagtctctatataagtcgaatctacttctagaca 868
Query: 121 aagctgctctagaggaatgagtaaggcctgatttatggctatagcaaaatgaataggcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 aagctgctctagaggaatgagtaaggcctgatttatggctatagcaaaatgaataggcaa 808
Query: 181 atattgagctctgatttaaaaaaaatctgccttgtaattctatgaattggtggttaaata 240
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 atattgagctctgattaaaaaaaaatctgccttgtaattctatgaattggtggttaaatg 748
Query: 241 atcaaatattgcatactttttaaagtcaccaataaataaatgtttgtttcctaagccaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atcaaatattgcatactttttaaagtcaccaataaataaatgtttgtttcctaagccaaa 688
Query: 301 cacagttggattggtttttctaaatctatggtccaccccttttagaaaaaaaattatttg 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 687 cacagttggattggtttttctaaatctaaggtccaccccttttagaaaaaaaattatttg 628
Query: 361 agttcatataattacagagtatgctaggaaaattgagcaaggtactgttgaaaactctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agttcatataattacagagtatgctaggaaaattgagcaaggtactgttgaaaactctct 568
Query: 421 gttaaaagaaaatattacttaaataaggataacgcttatttttattattgaaaaagtgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gttaaaagaaaatattacttaaataaggataacgcttatttttattattgaaaaagtgat 508
Query: 481 aattaaaaattcagaatggttatagaatatttctgtagtgggctcctgggaagacggaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aattaaaaattcagaatggttatagaatatttctgtagtgggctcctgggaagacggaca 448
Query: 541 aacaacacctcaaccaaaaaaaaccaaacaataaaacaacacccccaataaacaacaaag 600
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 447 aacaacacctcaaccaataaaa-ccaaacaataaaacaacacccccaataaacaacaaag 389
Query: 601 ctaaacgaataaatattaaaaccaggtgattttgcaattagaaaaaaaaa---ttagacc 657
||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 388 ctaaacgaataaatactaaaaccaggtgattttgcaattagaaaaaaaaaaaattaggcc 329
Query: 658 aaagcttcctcttgacccccgtgcaaagaacactagtaagtgctttaaagaaacttctgt 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaagcttcctcttgacccccgtgcaaagaacactagtaagtgctttaaagaaacttctgt 269
Query: 718 gctgtgactcttcagtagataaaaccttacatctgtatttatcactctgaactcatgctg 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctgtgactcttcagtagataaaaccttacatctgtatttatcactctgaactcatgctg 209
Query: 778 gtatctga 785
|||||||
Sbjct: 208 atatctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 1187
Length adjustment: 10
Effective length of query: 775
Effective length of database: 1177
Effective search space: 912175
Effective search space used: 912175
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
