Query= MSMg01no305_b12.b1 MSMg01no305_b12.b1 CHROMAT_FILE:
MSMg01no305_b12.b1 PHD_FILE: MSMg01no305_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:36 2005
(452 letters)
>mm_chr19_20958546_20959397
Length = 852
Score = 845 bits (437), Expect = 0.0
Identities = 448/452 (99%)
Strand = Plus / Plus
Query: 1 tctcaggatgctgcctgtgaataaaaagcattctgctttgaaagactggcaaagttcttc 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaggatgctgcctgtgaataagcagcattctgctttgaaagactggcaaagttcttc 260
Query: 61 accacagtacctatgtgttcctatgattatctttttaaacagttgtaagagtcaggattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accacagtacctatgtgttcctatgattatctttttaaacagttgtaagagtcaggattt 320
Query: 121 tctttttgcaaatgctgccagtgttatctgggactgtttgggtctaaattgttcctacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttttgcaaatgctgccagtgttatctgggactgtttgggtctaaattgttcctacag 380
Query: 181 aaatctccattatctgttagaactatgtgttctgtttttttgatccatgagtgggcaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatctccattatctgttagaactatgtgttctgtttttttgatccatgagtgggcaagc 440
Query: 241 aatttaaaatggtattctcgcaatcgtggaggtctaatccattctgcagtaatcaggact 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aatttaaaatggtattctcgcaatcgtggaggtccaatccattctgcagtaatcaggact 500
Query: 301 gcctggcaagtctgattgctcaccatagagcanactcagaatggcaggctatcgtctgta 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 gcctggcaagtctgattgctcaccatagagcaaactcagaatggcaggctatcgtctgta 560
Query: 361 ctggaaccaaagcttagataggccatccacagagtacattatgcttctatgtgggctggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggaaccaaagcttagataggccatccacagagtacattatgcttctatgtgggctggt 620
Query: 421 ctctctgatgaattgacttggaatactatttc 452
||||||||||||||||||||||||||||||||
Sbjct: 621 ctctctgatgaattgacttggaatactatttc 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_b12.g1 MSMg01no305_b12.g1 CHROMAT_FILE:
MSMg01no305_b12.g1 PHD_FILE: MSMg01no305_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:36 2005
(727 letters)
>mm_chr19_21111560_21112685
Length = 1126
Score = 1116 bits (577), Expect = 0.0
Identities = 601/609 (98%), Gaps = 1/609 (0%)
Strand = Plus / Minus
Query: 119 ggtcatagtgacaggatcgtccagttcccttgtgtgactcttcctgtcattttcaaagct 178
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1126 ggtcatagtgacaggatcgtccagttcccttctgtgactcttcctgtcattttcaaagct 1067
Query: 179 ctgtcgtcttctcagtccttcagaccatgctaacatgcccgcctgcgtgccgtccttctg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 ctgtcgtcttctcagtccttcagaccatgctaacatgcccgcctgcgtgccgtccttctg 1007
Query: 239 ctcttgacctatctcccctcctccctctcctgtcttctttgctccttcctctcttccttt 298
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1006 ctcttgacctatctcccctcctccctctcctgtcttctttgctccttcttctcttccttt 947
Query: 299 acacctttctctactcctttgggttactctacccctcaggcctgatcttgtgcagcctgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 acacctttctctactcctttgggttactctacccctcaggcctgatcttgtgcagcctgt 887
Query: 359 gcaagccgtcttctcccaaagcacagagcatcgtgtatgctgcgtgtttgagtgactgtt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gcaagccgtcttctcccaaagcacagagcatcgtgtatgctgcgtgtttgagtgactgtt 827
Query: 419 gactacatgaccattttcttctaaattgatggtcctgtagtaaccagtatgctccattgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gactacatgaccattttcttctaaattgatggtcctgtagtaaccagtatgctccattgg 767
Query: 479 gcatctagggcttatcttaaagcgtaacacttcaatacatttgtcagccatcaccttcca 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 766 gcatctagggcttatcttaaagcgtaacacttcaatacatttgtcagccttcaccttcca 707
Query: 539 agggatgctttaaagaataaagatggcagggttccacaggcatgtttatcaggtcaggta 598
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 706 ggggatgcgttaaagaataaagatgacagggttccacaggcatgtttatcaggtcaggta 647
Query: 599 aggagacggcagttgttaaaacagtgatgcacttgcaggaaactggacaaagagttgtta 658
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 646 aggagacggcagttgttaaaacagtgatgcaattgcaggaaactggacaaagagttgtta 587
Query: 659 atatttatttagacattgcagcaggtcccaaagcgcaggtttgccagcgctggcaatagc 718
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 586 atatttatttagacattgcagcaggtccc-aagcgcaggtttgccagcgctggcaatagc 528
Query: 719 gccatctgg 727
|||||||||
Sbjct: 527 gccatctgg 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1126
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1116
Effective search space: 800172
Effective search space used: 800172
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
