Query= MSMg01no305_e03.b1 MSMg01no305_e03.b1 CHROMAT_FILE:
MSMg01no305_e03.b1 PHD_FILE: MSMg01no305_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:57 2005
(415 letters)
>mm_chr19_21183797_21184611
Length = 815
Score = 673 bits (348), Expect = 0.0
Identities = 401/432 (92%), Gaps = 28/432 (6%)
Strand = Plus / Minus
Query: 3 cggaattcaaaatgataaac--aacacacacacacacacac--acac--acacacaaaca 56
|||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||
Sbjct: 706 cggaattcaaaatgataaacaaaacacacacacacacacacaaacacatacacacaaaca 647
Query: 57 catacacacat----------acatacacacacatatggcggggcgggaggaaggaatgg 106
||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 646 catacacacatacacacacacacatacacacacatatgg-ggggcgggaggaaggaatgg 588
Query: 107 aaagaaacatatttagaagtgctacattcatgtagccaaacactatcattaaaataaaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaagaaacatatttagaagtgctacattcatgtagccaaacactatcattaaaataaaag 528
Query: 167 catttaatacatatcacc-aaaaaaaaagggaagcctggataataaggttgtacatttaa 225
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 catttaatacatatcaccaaaaaaaaaagggaagcctggataataaggttgtacatttaa 468
Query: 226 tgcatcagtaaataaaacattttatttccagttataaaggtcttcaagaatgttattagt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 467 tgcatcagtaaataaaacattttatttccagttataaaggtcttcaagaatgttattggt 408
Query: 286 cattatttccaatgagcaactatgttcccaagggcactgagtataataaagtgaatctga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cattatttccaatgagcaactatgttcccaagggcactgagtataataaagtgaatctga 348
Query: 346 caatatgcttacttttttttt-----ctggtgctctttggttataagaatacattggaaa 400
|||||||||||| |||| ||| ||| ||||||||||||||||||||||||||
Sbjct: 347 caatatgcttac-----ttttaaaagctgatgcgctttggttataagaatacattggaaa 293
Query: 401 gggttctcctct 412
||||||||||||
Sbjct: 292 gggttctcctct 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no305_e03.g1 MSMg01no305_e03.g1 CHROMAT_FILE:
MSMg01no305_e03.g1 PHD_FILE: MSMg01no305_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:57 2005
(327 letters)
>mm_chr19_21035061_21035787
Length = 727
Score = 536 bits (277), Expect = e-157
Identities = 306/327 (93%), Gaps = 18/327 (5%)
Strand = Plus / Plus
Query: 1 cacagtcaaaacatcctttctctgcagcactgacagccagtctttgccccaagcacttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagtcaaaacatcctttctctgcagcactgacagccagtctttgccccaagcacttgt 260
Query: 61 ttatcaccacttcttttgccgaggtagtaccctcaataatttttcaagtttctgttctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatcaccacttcttttgccgaggtagtaccctcaataatttttcaagtttctgttctcc 320
Query: 121 tagacatgtaaccctgtgttcaccagaggctcacaagcatcctcttccctcctagagaaa 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagacatgtaaccttgtgttcaccagaggctcacaagcatcctcttccctcctagagaaa 380
Query: 181 tgctgcgatttgggtggaatataattcagaagaatgcaccatgcatcctcccagaagaca 240
|||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 381 tgctgcgatttggg------------------aatgcaccatgcatccttccagaagaca 422
Query: 241 agtgtgtcagcatcccatcatcacacagttccgattggcagcagggaaagttaactttgg 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 423 agtgtgtcagcatcccatcatcacacagttccgattggaagcagggaaagttaactttgg 482
Query: 301 ctcacagtttttgagattttgtttcag 327
|||||||||||||||||||||||||||
Sbjct: 483 ctcacagtttttgagattttgtttcag 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
