BAC Information

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BAC

Clone NameMSMg01-305I03
Chromosome19 (Build37)
Map Location 18,018,635 - 18,019,005
singlet/doubletsinglet
Overlap genenone
Upstream geneA230083H22Rik, Gcnt1, Rfk, Pcsk5, Eef1a1-ps1
Downstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305I03.T7 (MSMg01no305_i03.b1)MSMg01-305I03.TJ (MSMg01no305_i03.g1)
ACCAG430452AG430453
length1,2551,323
length of high quality
(start - end)
436 (30 - 465)379 (74 - 452)
definitionCHROMAT_FILE: MSMg01no305_i03.b1 PHD_FILE: MSMg01no305_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:31 2005CHROMAT_FILE: MSMg01no305_i03.g1 PHD_FILE: MSMg01no305_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCGTCATTTCGGCCTATAGACTCCTATAGGGAGAGGATCCGCGGAA
TTCTCAATAAAGGAAACTCACATGGCCCACAAACACTTAAATATTCAACA
TGCTTAGCCATCAAAGAAATGCAAATTAAAACTACTTTGATATTCCATCT
TACACTTGTCAGAATGTCTAAGATCAACAACCCAAGTGACAGCTTATGTT
GGTGACAATGTAGAGTGAGAAGATTACTCCTCCACTGTTGGGAATGAAAA
CTTGTGAAGTCACTAAAAAAAATCAATATGGTGGTTCTTCAGAAAATTTG
GAATCAATTTCACTCTTGGGCATATGCCCAAAGGACCTCTCTATCCTACC
ATAAGAATACTTACTCAACTATGTTCATTATAGCTTTATTCATAATAGCC
AGTTTCTGGAAACAATTAGGTATCTCTCAACAGATGAATGTATAAAGAAA
ATGTTTTTTTTTTCCCCCCCCCCGTATTAGTCAGCTATTAAAAAAAAACA
GGGGGAAAATTTCAGGCAAATGGATGGAACTAGAAAAAAAAGTCCCAAGT
GAGATAACTCAGATTCAGAAAGATAAATATGGTGTGCATTTGCTTTTAAA
TGGATATTAGCTGTTAAGTAAATGATGTCCAGCTTCAATTCAAAGACCCA
GAGTAGTTATGCAAAGGGGGAGGATCTAGGGGCATGCATGGATCTCCCTG
GAGGGTTAAATGAAATAGATTTTATGGGCAGACTGGGGGCAAATAGGGAA
AGGAATGGGGAGATCAGGTTGNGAGAGTGGGGCTAGAGGGGGAGAATGCA
TAGAGAGATGGTTGGAATTGAGGGCTATTTGGGAGNTAGTATGGAGTCTT
ATTGCATGGATACTCTGCAATGTTTGAAGTAATCTCCACAAGACTCTTAT
TAATCAGAAATATTAATTCTCATTGCTCTTCTTTTGAACTGTATAATGCT
TCCTATGTCTGACTGGCCTACTTGTATTTCTGGTTGTCCTAATTTTTCAA
GGAATTCCCCTTAACTCATGCTTCATTTATACAATAAAATTTCCCCTCAC
CAATACCAGTTTCCTTTTTCTAAATAAACCCCACCCCCCCCTACTAATAT
GTATTTACCTCTTTGACCCTTCCCTCCTCTTTATCTCTTCTTTTGCTACT
TTCTCCCGTTTTATTATTTAATCTTCTGCTATATTTTATTTTTATTTCAT
TTCTATTGTTCTCCTTTGTCTCCATTCATTTCTTTATACTCTAATGTTCT
GCAAT
NNNTTCCGAGACGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATAATTTTCAGACTAAGAGGACTCTT
ACCTTACTTCCCATGCTGGGACAAAAAGTCAGGTCTGGGAGCAGAATCCA
ACATCCAGCATTTCTCACATTCTGTGTTCGCCTCGGAGGGCCTTGATGCA
AACATGGATAATGCTAAATGAGTTCATCTCATGTGTTTGAATGAATTGAT
CCAAACACCATCTTTCTAGTTAGCTTTCAATTGCTGTGATAAACACCATA
AACTCTGTTGGGGGAAGGGAGGATTCATTCCATCTTATCCTTCCAGCTAA
CAAATCTATCAGTGAGGAAAGTCAAGGCAGGAACTGAAGCAGGACAGGAA
TTTTTTGGCAGGAACTGCAGCACAGACCAGAGGAACACTGCTTACAGGAT
TGTTTTTTGTTTCCCCCCCCCCCNGNTNNCTTTTACTCTTCAAAAAAAGA
GGGGGGGGNGATGGTACTTAACTACAATGGTTTGGGCACTCTGACACTGG
TCATGAATTAAGAAAATGTCCCACAGGCTGGATTTCAAGAAATCTTATGA
AGGCATTTTCCCAACTAGAGTTCCTCTTTCCAGATAACTCCAACTTGTGT
CAAGTTTGTCAAAAACCAGCCATGACAACTATGGCTTATAAGACAAAGGG
AAGACAGTGAGTAAACTATAGAATTCAAAATTATTATATGAACTTANGGT
AATTATTTCAATTCTAATATTAGTATCTGAAATGTTGCAGATTTAAAAAG
ATCATTTCATCTTCCTATAAGTTAGTAACCATCAGGAGCCATGGAATAAT
TAAACATTTGATACATTAAAAGCAGTAAAAAGAATGAAGTCTTAGGAAGG
ACCCTGAATATTCTAGCTTAAGTACCATCCCTATGACAACCATAACTTTT
GCATTTTCCCTTTTTTTTAGGTTAAATTTGCATCTTAAAGGGCATATTAA
CATAGGCTTTGAAGTGGTGGGGTTTAGCGAAATTACAACAATAATCTAAT
CTCCCAAACTTATATTTGCAAATATTTTATGCTTATTTTCATTATATTAA
TCGTCCGTATTATATGTTCTTTTTTTTTCTATCTTTTTCTTAAAACTATA
CAAAGATAGACACCATATATTCTATTCGATACTTAAATATACTACTTAAT
TTATTTTTTTCCCTTAATGGTTATATACTCNCTAATTATCATTATTCATA
TATAGAATTTAGACTTTGTATAACTTTTCTTATACCCATTTGCACGTATC
ACAATCACGTATATTAATACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_i03.g1 MSMg01no305_i03.g1 CHROMAT_FILE:
MSMg01no305_i03.g1 PHD_FILE: MSMg01no305_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:32 2005
         (379 letters)



>mm_chr19_18018435_18019216
          Length = 782

 Score =  574 bits (297), Expect = e-168
 Identities = 355/385 (92%), Gaps = 20/385 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tataattttcagactaagaggactcttaccttacttcccatgctgggacaaaaagtcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataattttcagactaagaggactcttaccttacttcccatgctgggacaaaaagtcagg 260

                                                                       
Query: 61  tctgggagcagaatccaacatccagcatttctcacattctgtgttcgcctcggagggcct 120
           |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tctgggagca-aatccagcatccagcatttctcacattctgtgttcgccttggagggcct 319

                                                                       
Query: 121 tgatgcaaaca----tggataatgctaaatgagttcatctcatgtgtttgaatgaattga 176
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgatgcaaacaaacatggataatgctaaatgagttcatctcatgtgtttgaatgaattga 379

                                                                       
Query: 177 tccaaacaccatctttctagttagctttcaattgctgtgataaacaccataaactctgtt 236
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 380 tccaaacaccatctttctagttagcttgcaattgctgtgataaacaccataagctctgtt 439

                                                                       
Query: 237 gggggaagggaggattcattccatcttatccttccagctaacaaatctatcagtgaggaa 296
           ||||||||||||||||||||||||||||||||||||             |||||||||||
Sbjct: 440 gggggaagggaggattcattccatcttatccttcca-------------tcagtgaggaa 486

                                                                       
Query: 297 agtcaaggcaggaactgaagcaggacaggaattttttggcaggaactgcagcacagacca 356
           |||||||||||||||||||||||||||||||  |   ||||||||||||| |||||||||
Sbjct: 487 agtcaaggcaggaactgaagcaggacaggaacctggaggcaggaactgcatcacagacca 546

                                    
Query: 357 --gaggaacactgcttacaggattg 379
             |||||||||||||||||||||||
Sbjct: 547 cagaggaacactgcttacaggattg 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 782
Length adjustment: 9
Effective length of query: 370
Effective length of database: 773
Effective search space:   286010
Effective search space used:   286010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)