TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGATTAGCCTCATAAGAATAGAAGTGAAGAGTAGAAATGGAAT
TAATGAATACAATAAATGGGATCCGGAAAAGGTCCAAGGGTCATGATATC
ATTTTAAGAGCCAGATGAATAGGCTCTTGACAAGATAGTAGTCAAAAACA
CATTTCACAGAGTCCACGAAAAATTTTCACTCTTTTCTCTTACCAATTTC
AATTCGATGTAATTGATGGCATATTTTTTTCATTGTATGTATGATGCTTA
TAGCTATCCTTAACACATTTATTAGCCTTGAAAATAACATTTCAAATTCT
ACTCAGACAATAGTCTCAATGTTATCCTCCCCTAGCCAGCCTTATGGTGG
CTTTCTGATGTTGACACTGCGCGTGTTCCTTGTCTGGGGCCCATGTTCTC
TTTCGACTCTGCTGAATCCACACATTCTGTTTGACTAAGTAACAGGAACA
AATACTCTTTCCATAATGGATATACTGGAGGTGTCATGTTTCTCAGAATC
TCCTCTGCAGTTTATTTGCACTAAGCCAGGGCCTCTCAACCTTCCTAATG
CTGCAGCCCTTTAATATAGTCCTCCATGTTATCGTGACCCCCCAACCATA
ATATTATTGTTGTTGCTCCTTCATAGCAGTAATTTTGCTACTGTTATGAA
CTGTAATGTAAATATCTGTGTTTTCCCATGGTCTTAGGC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGATTCTTGAATCAATAAATCTA
AGGCAAGGCTAAGAAGGGTCATGGGTGTAGAACTGGTTGAAAAGGACCAC
AGATTTGTTATATACATGCTGAAAAGGGAATAATACTTACTTGTGGATGA
AGTAGTCCCCAGCAAGGCTCCCATTCCTTCAGTGTAGGAAAAACCTCCTG
CACTGGCTGTGTGAATCTGTTCATGGGAACTACCACAAATGTATGTCAGG
TGGAAGAGAGGAAAGGGTGCAGACTTAAAGTGGAATGTTTAATTGGAGTT
TCAGGTCTGATTTTTTTTTAATTCCCCCCCCCCCCAGAAAATAAACATCT
CCAAGAGTACATGGCTCACCCTGTCATGAAACCAACACCCAAAAGAAGGC
AGCTAATTTTTCAATATCCTGAGGCTCCATCCAGTTACCATGCAAAATTA
AACATCACAAGTTACACAAGATTTGTGGGTGCTCATCACAGTGACCATGT
CTTTTTTTCCGCCACAGTGAGGTCAACCGGGAATCTCTGGAAGCAATCCT
TCCACAGCTGAAGTGTCATTTCACCTGGAATTTATTCAGGGAAGGAAGTA
TGTCCAGTCATATGGAAGACAGGGTGTGCAACCAGTTCGAACATTTATAC
TCTGAGGAGAACGCATACATGCATGACTTATTGTCCTACATAAAGCA

Query= MSMg01no307_l15.b1 MSMg01no307_l15.b1 CHROMAT_FILE:
MSMg01no307_l15.b1 PHD_FILE: MSMg01no307_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:51 2005
         (664 letters)



>mm_chr19_34827083_34828146
          Length = 1064

 Score = 1230 bits (636), Expect = 0.0
 Identities = 654/660 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggattagcctcataagaatagaagtgaagagtagaaatggaattaatgaata 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattctaggaaaagcctcataagaatagaagtgaagagtagaaatggaattaatgaata 672

                                                                       
Query: 65  caataaatgggatccggaaaaggtccaagggtcatgatatcattttaagagccagatgaa 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 caataaatgggatctggaaaaggtccaagggtcatgatatcattttaagagccagatgaa 612

                                                                       
Query: 125 taggctcttgacaagatagtagtcaaaaacacatttcacagagtccacgaaaaattttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taggctcttgacaagatagtagtcaaaaacacatttcacagagtccacgaaaaattttca 552

                                                                       
Query: 185 ctcttttctcttaccaatttcaattcgatgtaattgatggcatatttttttcattgtatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctcttttctcttaccaatttcaattcgatgtaattgatggcatatttttttcattgtatg 492

                                                                       
Query: 245 tatgatgcttatagctatccttaacacatttattagccttgaaaataacatttcaaattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tatgatgcttatagctatccttaacacatttattagccttgaaaataacatttcaaattc 432

                                                                       
Query: 305 tactcagacaatagtctcaatgttatcctcccctagccagccttatggtggctttctgat 364
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tactcagacaaaagcctcaatgttatcctcccctagccagccttatggtggctttctgat 372

                                                                       
Query: 365 gttgacactgcgcgtgttccttgtctggggcccatgttctctttcgactctgctgaatcc 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gttgacactgtgcgtgttccttgtctggggcccatgttctctttcgactctgctgaatcc 312

                                                                       
Query: 425 acacattctgtttgactaagtaacaggaacaaatactctttccataatggatatactgga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acacattctgtttgactaagtaacaggaacaaatactctttccataatggatatactgga 252

                                                                       
Query: 485 ggtgtcatgtttctcagaatctcctctgcagtttatttgcactaagccagggcctctcaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggtgtcatgtttctcagaatctcctctgcagtttatttgcactaagccagggcctctcaa 192

                                                                       
Query: 545 ccttcctaatgctgcagccctttaatatagtcctccatgttatcgtgaccccccaaccat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccttcctaatgctgcagccctttaatatagtcctccatgttatcgtgaccccccaaccat 132

                                                                       
Query: 605 aatattattgttgttgctccttcatagcagtaattttgctactgttatgaactgtaatgt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aatattattgttgttgctccttcatagcagtaattttgctactgttatgaactgtaatgt 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no307_l15.g1 MSMg01no307_l15.g1 CHROMAT_FILE:
MSMg01no307_l15.g1 PHD_FILE: MSMg01no307_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:51 2005
         (286 letters)



>mm_chr19_34685229_34685914
          Length = 686

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagattcttgaatcaataaatctaaggcaaggctaagaagggtcatgggtgtagaactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagattcttgaatcaataaatctaaggcaaggctaagaagggtcatgggtgtagaactgg 260

                                                                       
Query: 61  ttgaaaaggaccacagatttgttatatacatgctgaaaagggaataatacttacttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaaaaggaccacagatttgttatatacatgctgaaaagggaataatacttacttgtgg 320

                                                                       
Query: 121 atgaagtagtccccagcaaggctcccattccttcagtgtaggaaaaacctcctgcactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaagtagtccccagcaaggctcccattccttcagtgtaggaaaaacctcctgcactgg 380

                                                                       
Query: 181 ctgtgtgaatctgttcatgggaactaccacaaatgtatgtcaggtggaagagaggaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgtgaatctgttcatgggaactaccacaaatgtatgtcaggtggaagagaggaaagg 440

                                                       
Query: 241 gtgcagacttaaagtggaatgtttaattggagtttcaggtctga 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcagacttaaagtggaatgtttaattggagtttcaggtctga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)