BAC Information

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BAC

Clone NameMSMg01-307O13
Chromosome19 (Build37)
Map Location 59,008,698 - 59,009,081
singlet/doubletsinglet
Overlap genenone
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik, Hspa12a
Downstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2, Rab11fip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307O13.T7 (MSMg01no307_o13.b1)MSMg01-307O13.TJ (MSMg01no307_o13.g1)
ACCAG432130AG432131
length739796
length of high quality
(start - end)
374 (37 - 410)338 (74 - 411)
definitionCHROMAT_FILE: MSMg01no307_o13.b1 PHD_FILE: MSMg01no307_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:05 2005CHROMAT_FILE: MSMg01no307_o13.g1 PHD_FILE: MSMg01no307_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAATTCCTTT
CCATCACCAGGCTCTGCAGGTTACCAGGGGCTAAGGCAGTTGATTTGCTC
ATTGCCATTCGGTGTTTAAAGGCAGAACACCTGCTGTCTTGCCGACAGTC
CAGCAAACCCAAGCTGTGAGAGGACCACTTACAAATTCACATCTGGAAAA
GGTAGAGGATGCTGAAGGCCCCCTGTTTTCCAGTTAGACGGTGCTTGAAC
CAGAGTCAACACAGAATCACTGGCTAAGGGAGGAGAGGCCTGTTAGGCCT
TGGTGGGATGCAAGAGAGCATGATGACCACCTTGCGGATGGTGAAGCCAC
AGTGTACCATGAAGCCAACCTCATTTCCTCCTTCAGGGAAAGTCTGCAGC
AATCTCCCCCCCTCCTTAAGTCAGAAGGCCCAGCGAACCCCAGGAGTGTC
CTGTTTGGTCCTTTTTTTCTTTTAGTTTGATACAAACCCCAGCCTCCTTT
CTCCAGGGATTTTCTTGCAGCTACCAATTATTTTAAAATATCCAGTTGAA
AAGGGTACACACTTAAGAGTTTGACACCAGTGTGAATGACTTAAATGCTT
AAGACAAGCTATAAATGACACAGGGTGACTTGAGGGGTAAAAATCCTTGT
CTACCTTTAGAAAGCACGGTGTGTCTGTCATCAATACAACAAAGGACAAA
CGCAGATGCAGCAATATGAACCTTTTCCCAGATGGGTCA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTAGACTGTGAGAGCACACAGGAGA
CCTGCAAGTACTCAAACCAGACGAAATCCCAGGGCTGAGAGGAGGAAGTG
GGCAAAAGTCCCACCCCTAACTCCATGTAACTGATGCCTCCTGGGAAGGG
AGAGCAGTGTCCTCCAGTGGAGAGTCACTGGGACCCTTAGCCACATGCCA
GGGCAGGGTCCATGTGCAGGAGTAGTTTGACTAACACAAAACAGACACCA
CGGTTTTGTGTGGTCTTTTTGTTTCGTTTTGGTTTACTTTCAGTTTTAGT
TTCGTTTAGTTTTGCTTAAGTGAGAGAACATGAAGATGGATGGGGGGGGG
CGGGGAGGTAGGCCCACCTCTGAGGATTTGAATGGGGGGGAAGNTTCTTT
CCCCACCCCCCTATTCTTTTCTCCATTCCTCCTTTCCCCTCTATTCCCTT
TCTCCCTTCCCTTTCTCCCCCTCCCCCCTTATTCCCCTTTTTTCACCCAC
TTTCCCTCCCTTTCTTTATTTTAGCCTTCCCTTACTCCTTCTTCCTTTCT
TTACTTTTTCCGCTTTTCCCTACTTTACCCTTCCTTTTTTCCCACCAACA
TTTTCCTCTTTCTCCCCTTCCCTTTTCTCCGCCCTTTCCCGCCTCCTTCC
TTTGCCACCTTTCCCGTTTTTTTTTTTCTCGCCCCTCCGCCTTTCCTGTC
AGTTGTCCCCTTCTTTCATCCATTTACGCCCCCTTTTTCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_o13.b1 MSMg01no307_o13.b1 CHROMAT_FILE:
MSMg01no307_o13.b1 PHD_FILE: MSMg01no307_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:05 2005
         (374 letters)



>mm_chr19_59008509_59009283
          Length = 775

 Score =  609 bits (315), Expect = e-179
 Identities = 361/385 (93%), Gaps = 18/385 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttccatcaccaggctctgcaggtt-------a--ccaggggctaaggcagtt 55
           ||||||||||||||||||||||||||||||||       |  |||||||||||||||| |
Sbjct: 190 gaattcctttccatcaccaggctctgcaggttctttggcagcccaggggctaaggcagct 249

                                                                       
Query: 56  gatttgctcattgccattcggtgtttaaaggcagaacacctgctgtcttgccgacagtcc 115
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gatttgctcattgccgttcggtgtttaaaggcagaacacctgctgtcttgccgacagtcc 309

                                                                       
Query: 116 agcaaacccaagctgtgagaggaccacttacaaattcacatctggaaaaggtagaggatg 175
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agcaaaccctagctgtgagaggaccacttacaaattcacatctggaaaaggtagaggatg 369

                                                                       
Query: 176 ctgaaggccccctgttttccagttagacgg-------tgcttgaaccagagtcaacacag 228
           ||||||||||| ||||||||||||||| ||       |||||||||||||||||||||||
Sbjct: 370 ctgaaggccccgtgttttccagttaga-ggatgatcctgcttgaaccagagtcaacacag 428

                                                                       
Query: 229 aatcactggctaagggaggagaggcctgttaggccttggtgggatgcaagagagcatgat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aatcactggctaagggaggagaggcctgttaggccttggtgggatgcaagagagcatgat 488

                                                                       
Query: 289 gaccaccttgcggatggtgaagccacagtgtacca-tgaagccaacctcatttcctcctt 347
           ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct: 489 gaccaccttgcggatggtgaagccacactgtgccaatgaagccaacctcatttcctcctt 548

                                    
Query: 348 cagggaaagtctgcagcaatctccc 372
           |||||||||||||||||||||||||
Sbjct: 549 cagggaaagtctgcagcaatctccc 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 775
Length adjustment: 9
Effective length of query: 365
Effective length of database: 766
Effective search space:   279590
Effective search space used:   279590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)