BAC Information

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BAC

Clone NameMSMg01-308C04
Chromosome19 (Build37)
Map Location 28,888,031 - 28,888,283
singlet/doubletsinglet
Overlap genenone
Upstream geneRfx3, LOC666997, LOC433235, Glis3, EG434460, EG627788
Downstream geneSlc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308C04.T7 (MSMg01no308_c04.b1)MSMg01-308C04.TJ (MSMg01no308_c04.g1)
ACCAG432298AG432299
length837758
length of high quality
(start - end)
258 (45 - 302)176 (138 - 313)
definitionCHROMAT_FILE: MSMg01no308_c04.b1 PHD_FILE: MSMg01no308_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:23 2005CHROMAT_FILE: MSMg01no308_c04.g1 PHD_FILE: MSMg01no308_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTAATTATCCATGTGTGCTGCTGCCTTCAGCTTTCCCATATGGGT
TCCAGAGATCAAACGTATGCCACCATGATTCCACAGAAGGTGCTGAGCCA
CCTCACCAGTTCTAATAAATGTTTAAATGTATCTTGAATTTTAGAAATAA
CTGTAACAAATAAAATTAGACTTTTACTGAGAGATGAATCTTCAGTCACA
CCAAGAGTTCAGTTTTCCTGATCTCTGAGTTGATGGGGGGTGGGGGTGGT
CCTTTTTTACCCCCCTTTTTTTTTCTTCTAATACAAACACATTACAATTA
CTGATATTTTTTTATTTTCATCTCCCCACACCTCTCTTGCCACTTCTTCA
CTTTTTATTTTTTATTTTCCCCCCCCCCCCTCTTAACAAATTCAACATCA
TTTTTTTCACGTTTCTTATTTCTTAATCCTTTTTTCATTTTTTTCTTTTT
CCACTTCTCTTTTTATTATTTTACTTCCTCCTACCTACAATGCAAAACCT
ACTTTCCCATCTATTTTCCCTTCCCACCCTTATCTTTCCTTATTTTAACA
AATCTTCATTGCTACTTCATTCGACTTTCATCTTGTTAACATCATACCAT
ATTCTTTTTATAATTGTATCTTTACTCTCTTGTTTCACTTCTCTACCATT
TCTCCTTTATTTTTTTCATTATATCTACCTTTATTTTTGTCTTTTCGTTT
TATTTACGCTCCCAGCGCCTTACCTATTATATCCTTATTTTTCTCCAAAT
ATTCCATTACCACCGTTTTTTAACTTTCATGTCGGTT
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTAAGTTTTGAGGCTCACTACAGAG
GCGAGGATTGATGCTTTGTCCCCTGATTTTGGAGTAGACATATCATTTTG
TGATGGTTTGGGGTTTGGTTTGCTATAAAGAGAGCCATGTCATTGTGTTG
GTTTGAATAAGAATGGCTCCATAGGCTGGTATAGTTGAATGTTCAGTCAC
CAGGGAGTGGTGCTATTTGAGAAGACTAGAAGGATTAGTAGATGTGGCCT
CGTTGGACAAAGCGCGTCTTTTTTTAGTGGGTTTTGAGGTCCCTTTTTTC
CAAAATTTANGGTAANTATCCGNAACTAGACCGTAGCTGTCTTCAGAGAN
TTTTNTTCTCTCCCCCCCCCAAAATTTTATTTAAATCTTATGTGGGTGGC
GTGTAGCTGTCTTCAGATACACCAGAAGAGGTCACCATAGCTCACTACAG
ATGCCTGCGATCCATTTTGTGGTTGCTGCCATTCGAACTTCTGACTTTTC
AGACCAATTTTCCGTGCTCTTTAACCACTCTGTTATCCTCTCCCGCTTGG
GCTTTTGCAGCTTTCCCATTCCCCCCGCCAATTTCCCCCGTTTTTTTCCT
TGACTTGCGTACTCCCACTGTGTTTTTTTTTATTACATGCCCCCGTCTCC
CGGCCCCACTGTACTTACCCTCCCTTGTCTCTTATTTTTTGGCCCCACCC
CCTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_c04.b1 MSMg01no308_c04.b1 CHROMAT_FILE:
MSMg01no308_c04.b1 PHD_FILE: MSMg01no308_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:23 2005
         (258 letters)



>mm_chr19_28887828_28888486
          Length = 659

 Score =  439 bits (227), Expect = e-128
 Identities = 247/255 (96%), Gaps = 5/255 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtaattatcca--tgtgtgctgctgccttcagctttcccatatgggttccag 61
           |||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtaatta--cagatgtgtgctgctgccttcagctttcccatatgggttccag 261

                                                                       
Query: 62  agatcaaacgtatgccaccatgattccacagaaggtgctgagccacctcaccagttctaa 121
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agatcaaacgtaggccaccatgattccacagaaggtgctgagccacctcaccagttctaa 321

                                                                       
Query: 122 taaatgtttaaatgtatcttgaattttagaaataactgtaacaaataaaattagactttt 181
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 taaatgtttaaatgtatcttgaattttagaaatatctgtaacaaataaaattagactttt 381

                                                                       
Query: 182 actgagagatgaatcttcagtcacaccaagagttcagttttcctgatctctgagttgatg 241
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 accgagagatgaatcttcagtcacaccaagagttcagttttcctgatctctgagttgatg 441

                          
Query: 242 ggggg-tgggggtgg 255
           ||||| |||||||||
Sbjct: 442 ggggggtgggggtgg 456


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 659
Length adjustment: 9
Effective length of query: 249
Effective length of database: 650
Effective search space:   161850
Effective search space used:   161850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)