BAC Information

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BAC

Clone NameMSMg01-309E03
Chromosome19 (Build37)
Map Location 9,695,553 - 9,695,865
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688
Downstream geneLOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309E03.T7 (MSMg01no309_e03.b1)MSMg01-309E03.TJ (MSMg01no309_e03.g1)
ACCAG433100AG433101
length741735
length of high quality
(start - end)
316 (36 - 351)538 (76 - 613)
definitionCHROMAT_FILE: MSMg01no309_e03.b1 PHD_FILE: MSMg01no309_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:47 2005CHROMAT_FILE: MSMg01no309_e03.g1 PHD_FILE: MSMg01no309_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCAT
TCCTCTATTTATTTCTTGGCCAGCCACCTTAGTGTCACCTAGAAAATAAG
AGCACAAATCATAAGAGCAACATGGCATTGTACAAGAAAATCAAAAGCAT
GAAACAGAGCCAAGGAAGCCTATGGTTTGTACAAAAGAAGGAAACAAATT
TTTGAAAAACAAGACTCTGACAATTAAAGTATGATGTGGCAACAGGTAAT
TTTTCCCCAAGTGCTTTGAAAAATAATGCAAATTGCAGCAGTGGTTTTTT
TTTTTGCTTTTTTTTTTTTTTTTTTAGAAATACATTCTCCTTCTCTTTCA
GATTTATTTTACCCCCACCCACCCCAGACCCTCTTTCATGTCTTGGGATG
ATGCGACCCCCCCAGAACTCAAGAGGAACTGTTCTCGCTGAAATCACATG
AGGTTTATTGATAGCAACCATTTTTCTGGGGACTATTTGCATCCCTATTA
GGTATATAGCACTTCTACCCTGATTATCCGGTATAGGGCATATTTAAAGG
AAACATACCTAATTCATGTGCTTTTTCCCGGCCCCGCCGTTAATTACCAA
TAATACCAAACCCAATAACCCAAGTCTTGACCCTCTACATTATACTATAT
TCCTTTCCCCCGCCCCCCCCACTACTGATTTTCCTTTATCAGCACCCCCA
TCTACCTGCCCCCCTCCTTTTACTCCCCCTTTTTACACGTT
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGACCCTGCAATCCTCTGCTGTATA
TGTGTTGGGAACCTCATATCAGCTTGTGTATGCTGCCTGGTTCTTAGCTC
AGTGTCTGAGAGATCCCAGGGGTCTAGGTTAGTTGAGACTGCTGGTCTTC
TGATAGGGTTGCCCCCCTCCTCAGCTTCCTCCTGTTTTTCCCTAATTCAA
CCACAGGGCGCAGCAGCTTCTGTCCACTGGTTGGGAGTAAGTATCTGCAT
TTGACTCTTTTAGCTTCTTGTTGTACCTTGCAGAGGGCAGTCATGATCGG
TCCCTGTTTGAAAGTACACCATTGCATCAGTAATAGTGTTAGGCCTTGGG
CCTCCCTCTGAGCTGGATCTCAATTTGGACTTGTCACTGGACCTCCTTTT
CCTCAGACTCTTCTACACTTTTGTTCCGGCAGTTCTTTCAGATAGAAACA
ATTATGGGTCAGAATTTTTGACGGTTGGACAGCAACCCCATCCCTCCACT
TGATGCTCTGTCTTTCTACTGGAAGTGGGCTCTACAAGTTCCCTCTGTCC
ACTATAGAGCATTTCATGTAAGGTCACTTCCTTTGAGTCCTGAGAGTCTC
TCACCTACTAGGTCTCTGGTATGTTTCTAGAGGGTCCACACCTCCTATCT
CCCAGGTTGCTTGTTTCATTTCTTTCTGCTGGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_e03.b1 MSMg01no309_e03.b1 CHROMAT_FILE:
MSMg01no309_e03.b1 PHD_FILE: MSMg01no309_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:47 2005
         (316 letters)



>mm_chr19_9695349_9696064
          Length = 716

 Score =  555 bits (287), Expect = e-162
 Identities = 308/315 (97%), Gaps = 5/315 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcattcctctatttatttcttggccagccaccttagtgtcacctagaaaataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcattcctctatttatttcttggccagccaccttagtgtcacctagaaaataa 264

                                                                       
Query: 65  gagcacaaatcataagagcaacatggcattgtacaagaaaatcaaaagcatgaaacagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagcacaaatcataagagcaacatggcattgtacaagaaaatcaaaagcatgaaacagag 324

                                                                       
Query: 125 ccaaggaagcctatggtttgtacaaaagaaggaaacaaatttttgaaaaacaagactctg 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 ccaaggaagcctatggtttgtacaaaagaaggaaacaaatttgtgaaaaacaagactctg 384

                                                                       
Query: 185 acaattaaagtatgatgtggcaacaggtaatttttccccaagtgctttgaaaaataatgc 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 acaattaaagtatgatgtggcaacaggtaatttttccccaagtgctttgaaaaagaatgc 444

                                                                       
Query: 245 aaattgcagcagtggtttttttttttgcttt-ttt-ttt-tttttttttagaaatacatt 301
           ||||||||||||||||||||||||| | ||| ||| ||| ||||||||||||||||||||
Sbjct: 445 aaattgcagcagtggtttttttttt-g-tttgtttgtttgtttttttttagaaatacatt 502

                          
Query: 302 ctccttctctttcag 316
           |||||||||||||||
Sbjct: 503 ctccttctctttcag 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)