BAC Information

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BAC

Clone NameMSMg01-312M04
Chromosome19 (Build37)
Map Location 14,920,967 - 14,921,259
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
Downstream geneEG433225, EG635497, Pomc-ps1, LOC667482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312M04.T7 (MSMg01no312_m04.b1)MSMg01-312M04.TJ (MSMg01no312_m04.g1)
ACCAG434888AG434889
length735739
length of high quality
(start - end)
652 (46 - 697)301 (76 - 376)
definitionCHROMAT_FILE: MSMg01no312_m04.b1 PHD_FILE: MSMg01no312_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:55 2005CHROMAT_FILE: MSMg01no312_m04.g1 PHD_FILE: MSMg01no312_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCAAAACTTTTATCATGAATGGGTTTTGGATCTTGT
CAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCA
TCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTC
TTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGG
GTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGA
ATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATCTGG
TCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTT
TAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAACTTT
GGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAG
TTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTT
CTTCAGGATCTGGTGTTATGTCTCCCTTTTCATTN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAAGACAGAAAGCCATGGAGGTT
CCTCTTTCATTGTTCTTCCAGGACTCTCCCTAGAAACCTGGAAACTGTTC
TGCTAGGCTCTTCATGCACGTATTTGGTGTGTAATAAATATGATATTATT
TGGTGAAAAAAAAAACTATTATGCATCCCATGGCTTTGTCTTAAACCTCA
TGGTCTTCCGAATTGGGGCGGCAGAAGAATCAGTGATATTGATACAGTCT
TGGAGGACTTTGTACCTGACGTTCACCCAAATCCTTCACATGTTTTGACT
TTACAGCCTCCCTATTTTTTATGCCTCGCGCCCGGCCATGCCATTCACAC
CACGGGAAATAAGAGACAAGAAGCACTGAGTTCTCGGCCTTCGTCCCTCT
CCTAGGGACAAGTTCTTTCCTAGTACAAGGAAAGAACTTGAACTTGGTGA
TCTAGCTAGAAAGCCCTTGATTTTAAGTCACTCTGATGTCTACCTGCAGG
TAACTGTCACCTACTTTGTCAGATCAAGATTAGCTGCCTGAGGAGTGTTG
AACTCTATTGCTTTCCGCAGGGGAAAACAAAAGGCAGCAGGCATTGTACC
AATCTTTTAAAGCTCAAATTTGAGACAGAATTCCAGTTTTTTTCCTCTTA
TTCAGAAATGTAGAATTGTCATCTAAAGATGTAAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_m04.g1 MSMg01no312_m04.g1 CHROMAT_FILE:
MSMg01no312_m04.g1 PHD_FILE: MSMg01no312_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:55 2005
         (301 letters)



>mm_chr19_14920767_14921471
          Length = 705

 Score =  524 bits (271), Expect = e-153
 Identities = 286/293 (97%), Gaps = 4/293 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaagacagaaagccatggag----gttcctctttcattgttcttccaggactctccct 56
           ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 493 tctaagacagaaagccatggaggttcgttcctctttcattgttcttccaggactctccct 434

                                                                       
Query: 57  agaaacctggaaactgttctgctaggctcttcatgcacgtatttggtgtgtaataaatat 116
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agaaacctggaaaatgttctgctaggctcttcatgcacgtatttggtgtgtaataaatat 374

                                                                       
Query: 117 gatattatttggtgaaaaaaaaaactattatgcatcccatggctttgtcttaaacctcat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gatattatttggtgaaaaaaaaaactattatgcatcccatggctttgtcttaaacctcat 314

                                                                       
Query: 177 ggtcttccgaattggggcggcagaagaatcagtgatattgatacagtcttggaggacttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggtcttccgaattggggcggcagaagaatcagtgatattgatacagtcttggaggacttt 254

                                                                
Query: 237 gtacctgacgttcacccaaatccttcacatgttttgactttacagcctcccta 289
           ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 253 gtacctgacgttcacccaaatccttcacatgttctgactttaaagcctcccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 705
Length adjustment: 9
Effective length of query: 292
Effective length of database: 696
Effective search space:   203232
Effective search space used:   203232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)