Query= MSMg01no312_m13.b1 MSMg01no312_m13.b1 CHROMAT_FILE:
MSMg01no312_m13.b1 PHD_FILE: MSMg01no312_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:56 2005
(190 letters)
>mm_chr19_3662556_3663145
Length = 590
Score = 360 bits (186), Expect = e-104
Identities = 189/190 (99%)
Strand = Plus / Plus
Query: 1 gcccaattccaggtaattcaaccctttgctgagaccccaaaataaagagcaattttggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcccaattccaggtaattcaaccctttgctgagaccccaaaataaagagcaattttggtc 260
Query: 61 catgccttatttataatcacaaagcattacattggacctctgagtacttggagagtgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgccttatttataatcacaaagcattacattggacctctgagtacttggagagtgtgt 320
Query: 121 aggatcctgtgcacacacggtgcatgggggtggggaggagattctatcaccatcccaatg 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagcctgtgcacacacggtgcatgggggtggggaggagattctatcaccatcccaatg 380
Query: 181 gggaaggcca 190
||||||||||
Sbjct: 381 gggaaggcca 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space: 105924
Effective search space used: 105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no312_m13.g1 MSMg01no312_m13.g1 CHROMAT_FILE:
MSMg01no312_m13.g1 PHD_FILE: MSMg01no312_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:56 2005
(500 letters)
>mm_chr19_3819845_3820744
Length = 900
Score = 783 bits (405), Expect = 0.0
Identities = 440/459 (95%), Gaps = 14/459 (3%)
Strand = Plus / Minus
Query: 49 ggtccttgcttgtccaaaatgctttatttctatggtggatgtgagtgtgtccgtcttact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 ggtccttgcttgtccaaaatgctttatttctatggtggatgtgagtgtgtccgtcttact 841
Query: 109 aaggttgaatcagggattaaatacttgttgcaggaagggctggatgcccaggaagggacg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aaggttgaatcagggattaaatacttgttgcaggaagggctggatgcccaggaagggacg 781
Query: 169 ctcactggccagacactcgaggcctatctagataccttgttagtatggaaaactctaggt 228
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 780 ctcattggccagacactcgaggcctatctagataacttgttagtatggaaaactctaggt 721
Query: 229 ttttatgttacatgactggctatcatggttctctcgggatgtcatggttatgtgttccac 288
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 720 ttttatgctacatgactggttatcatggttctctcgggatgtcatggttatgtgt----- 666
Query: 289 ccccca---ca----aagactggctggcagctggttctaacacctgccattttcaattgt 341
|||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 --cccaggacagagaaagactggctggcagctggttctaacacctgccattttcaattgt 608
Query: 342 gagatttcctggggttttgaacctgcttcgaacttaccagttcttctgtttggtagcatg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gagatttcctggggttttgaacctgcttcgaacttaccagttcttctgtttggtagcatg 548
Query: 402 gtccacttgcccccacagatgtggacttttatgcctggctcaacttttttgacaccctaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtccacttgcccccacagatgtggacttttatgcctggctcaacttttttgacaccctaa 488
Query: 462 acttctgaccccactctctcctgaggttcctgctggtct 500
|||||||||||||||||||||||||| ||||||||||||
Sbjct: 487 acttctgaccccactctctcctgaggctcctgctggtct 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
