BAC Information

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BAC

Clone NameMSMg01-313D20
Chromosome19 (Build37)
Map Location 10,585,277 - 10,585,586
singlet/doubletsinglet
Overlap gene0610038F07Rik
Upstream geneLOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik
Downstream gene5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313D20.T7 (MSMg01no313_d20.b1)MSMg01-313D20.TJ (MSMg01no313_d20.g1)
ACCAG435226AG435227
length1,2721,246
length of high quality
(start - end)
379 (85 - 463)310 (138 - 447)
definitionCHROMAT_FILE: MSMg01no313_d20.b1 PHD_FILE: MSMg01no313_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:42 2005CHROMAT_FILE: MSMg01no313_d20.g1 PHD_FILE: MSMg01no313_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATTANNNNNGGGGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCCCAGAGTAGAAGGACAAATAAGTAAGAAAGTCAGATATA
ATAGAATAATTATGCATACTAAGGTCAACTGACCACCAGTCACGCACAAA
TAAAATCTATACAGCAATTGTTTAGGGCTAATGTTAGGATCCATGGAACA
CCTGATTTTTATAAAGAGCTGCCATGGGCTACTGAGATGTCTCCATCCTA
GCCTACTGCAGGCAGTCCCTTATTTCAGATAGCAGGTCCCCTGGAGGGAT
GTGTCTCCTGTTTCTCAGGGTCCCAGACGCCATCCTTTTCTACAAGGAGC
TGCTATGGGTTTCTGAGATGTCTCCATCTCTGCCTACTGCAGGCAGTCCC
TGTCTTTGTATGCTGTCCCCAGAACCCTATTACAGCTCCCCTGATAGGAC
CCTGATTTTTTTTTTCCCCCCCACCAGNAAACAACTCTTCCTCTAAAAAA
AAAGAGGGAGNAACACCTCTGGGAGCCTTTGGCCTGGGATACATATGTTT
ACCTCCTTAAACTGGCACTACAGCATAAAATACAGACTAATACTCTTCTC
CCCACAGGAGTCCAAGATTCTTCATGTCGTCCCTGCTGCACACTCTGGGA
TGAAGTGTCTTCTCATTTGCAGGGAGCAACTTAGGAGCCAGGAACAGTGT
GTGAAAACCAAAGAGCATGCATCATAATACCCCAGCTGCTAACATTTAAA
GAGCAGGAATTTTACATTAAAAAAAAAAATCCAGGCTCTGACTTCTCTCA
AAAATGTGGCCAACTTGGCATCTTGGCTTCCTTCCAGCCTGGCACTGGCA
GGTCAGAGCTGACTCAAGACTGCCCCCTTGTGGTAAGACAATATGGCATC
ATGCCCACCATGGCCACCCAGACTACAACCCACTTTGCCTCCTCGGTCAC
TCTACGAAAGCAAGGACTAGTTGCCTACCTTCCTTTTGGTTTTAAAAGAA
AAATAACCTTTTTAAAAGTCTTCCCCTTAACAGGGAAAACTTTTAACCTT
ACGGCTGAAATTAAGGGGCTTGCTTGGTTGAAGGGGGAGGGGCGGGGCCC
CCCCCTCCCCCAGCTTCTTGTCACGCATCTCTTCTCCCTCAACTTACTAT
ACCTCCTTGTTACTCATAGACTTCCCTGCTCCTCGCACCACCTCCTCCCC
ATTAACTTGTCTCCCATCTTCCTTTTCGTCCCCTTCTCTGCTCGCCTCTC
TCTAGACATATACACTCTTTCT
NNCCGAGTGACGCGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAAATATGAAAGATCTAAACACATTA
GTGAAAAACAGAGACTGTCAGATCGCCCAACATGAAAGAGCATGCATTCT
GACTTCAGAAAAACTCAATTTAGATATAAAGATCAAAGCAGCTTGTGATT
TTATAACGTAAGTACTCTAGCTGGGAATGGAAGAGGAAGTCAGACAGATG
GGAAGTGTGAGGAAAGACAGCCACTCCTGAGGCAGAGAGGGCTATGGAGC
AAGGCCCTCAAAAGCTGAAAGAGACTCACTGCTGGCAGGTCAATTAGGGA
AGTCATCCCTCCAACGTCAACAACACAAAACAAATTCTCAGAAAAATATG
TTAATGATCTTAGAAGTAGATCCTTCCCCAAGTCTCCAGACGGAAACACA
TTTTTTTTCCCCCCCCCCCCNCNNGANGNCCCCCTCTCAAAAAAAAGAGG
GGCCNCNNNNCNNNGNNCCNNNANNCCGANGNNNCCCCNNGNNNAGNAAA
CNNAAAAACNGGGCAAACCCCCACAAAGCAAGAGGAAAACAACCCAAACA
GAAAGCCACACACCAAGCAAAAACAAACCAAAAGAAANCNGAAGGCNCAG
CAAGCCGGCNAAGNNGAACACGGCGCAGGCCCNCAGACCCNAGAACCNGA
ANNCAACCCCNNGAACCCACAAGGNGGAAGCAGAGACCCGACCCCCACAA
GNNGNCCCCNGACNNCCACAAGNACACNGNGGAAAGCAGGAGCCCCCCCC
NCCACAGACACCGGACCAAAAAAAANAAAAAACGAACAACCAAAAAACCA
AACCCCCAAACGGGGGNGCACCCAACACCCGACCCCNGGAAAAAAAAACC
CAAAGGCGGAGGGCAAGGAAAGGGAAAACNCGAACCCCCAAGCAACCCCC
AAANGAAAAGCAAAGCCCCAAGCCCCCCCCGGGGCGACCGAACAAACCAA
CACCCCCCAAACGCCAAACCAGGGGGAAACACGGAACCACACCCCACCGG
GCCAGCAAACGCCCACGAAAGGCCCCCCCCAAAGCACCCCCCCCCAAAAG
GCCCGCCCACAGCAAACCCCACAAAACCCCCCCCACAAAAAACAAACACC
CCCCCCCCCGGGGGAAACAAACCCACGGCCCAGAGACCCCCGCCCCCCAC
CACCAAAACAAACCGGCCCAGCCCCCCACACAACCACGCACAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_d20.g1 MSMg01no313_d20.g1 CHROMAT_FILE:
MSMg01no313_d20.g1 PHD_FILE: MSMg01no313_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:42 2005
         (310 letters)



>mm_chr19_10585077_10585786
          Length = 710

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcatgcattctgacttcagaaaaactcaatttagatataaagatcaaagcagcttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcatgcattctgacttcagaaaaactcaatttagatataaagatcaaagcagcttgtg 260

                                                                       
Query: 61  attttataacgtaagtactctagctgggaatggaagaggaagtcagacagatgggaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttataacgtaagtactctagctgggaatggaagaggaagtcagacagatgggaagtg 320

                                                                       
Query: 121 tgaggaaagacagccactcctgaggcagagagggctatggagcaaggccctcaaaagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggaaagacagccactcctgaggcagagagggctatggagcaaggccctcaaaagctg 380

                                                                       
Query: 181 aaagagactcactgctggcaggtcaattagggaagtcatccctccaacgtcaacaacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 381 aaagagactcactgctggcaggtcaattagggaagtcatccctccaacgtcaagaaaaca 440

                                                                       
Query: 241 aaacaaattctcagaaaaatatgttaatgatcttagaagtagatccttccccaagtctcc 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaaattctcagaaaaatatgtcaatgatcttagaagtagatccttccccaagtctcc 500

                     
Query: 301 agacggaaac 310
           ||||||||||
Sbjct: 501 agacggaaac 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)