BAC Information

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BAC

Clone NameMSMg01-315F01
Chromosome19 (Build37)
Map Location 32,069,549 - 32,069,844
singlet/doubletsinglet
Overlap geneAsah2
Upstream genePrkg1, Cstf2t, 8430431K14Rik, 1810073H04Rik
Downstream geneEG668042, Sgms1, 2700046G09Rik, LOC100042138, LOC672490, LOC100042823, Minpp1, Papss2, Atad1, Pten, B430203M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315F01.T7 (MSMg01no315_f01.b1)MSMg01-315F01.TJ (MSMg01no315_f01.g1)
ACCAG435995AG435996
length694716
length of high quality
(start - end)
368 (50 - 417)297 (78 - 374)
definitionCHROMAT_FILE: MSMg01no315_f01.b1 PHD_FILE: MSMg01no315_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:44 2005CHROMAT_FILE: MSMg01no315_f01.g1 PHD_FILE: MSMg01no315_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCGGAATTCTCTAATGCCCAGTTTCCTTCAAGATGCAACCATAAGGCCAT
GAAGGAAAGCATCATGGGAGAAATGCACCTGTCAGCATAGCAGCAAGCCA
CTTAAGCAGGTTAAGGGAGTGGTGAGTTTGGGACAAGATCCCACCCAGCT
AAGCATGCAAATATGGTAGGTAGTACATATCTTTAATCCTAGGAGAAAGA
GGCAAGCAGATATTTGAATTCAAAGCCAGCCTGGTATAGAGCAAGTTGAA
GTAATAAATAAATAAATAAATAAATATATAAATAAATAAATAAATAAATA
AATAAATAAATAACTTAAGTGCAGGAATGGTGGTACATGCCTTTGATCCC
AACATTCAGGACACAGAGCCTTGCACCCCTCTTGAGTTCAAGGTCAAGCT
ACAGAGCAAGTTCCTTGACAGCCAAGCTTAGGCAGTGAAGGAGTTGGAAA
ACAGAAAGCTGGTGATAATGTAATAGAACAAGTCAGGGGGCATGTTCCAG
CTCCAACAAGCAGCAGAACTTGGCAGTTTTGGCCACGTAGCTCTGGCTTT
ACAGTCAAGAATCGGATACTACTGGCGACATTTGGTGCTGGTTAGGTGGA
ATCTAAGAAATTAGCTGGTGATTAAGAATAAACCAGCCATCCCG
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGAGAACCAGGTGAGCATCA
CTGTCTTCCACGTTTATACCAAGTTTCCCTTCACTTTACAGGAGACACCG
CACATCCAAACATATATCAGGGTTTTTTTTCTTTTTCTTTATTTGTGGAG
GTGGGAAAATGTTCAGTGGGTACAGCTAGGGTGGAATTGGATGTAGAGAT
CAGAGCCCATGAAGATTTAATCAACTTCTTCTAGTGCCACACGTAGAATA
ACTCCTCCAGGACTACACTGCTTCCTCAGAAGTTATAAATTCAGAGACAT
TCTCATTTACATATTTAAATTTAGAACTTACTAAGTTTGCTAACTTATTG
AAAGGGTCAAAGTAAAAAAAACCCACCTGGTTTCCCTGCCTTTTGGGGGA
CTTTCTAACCCCTCCAGCATTGCTCCCCAACTCTTGTGTTAATATGTGAT
CACACACTGTGATTTTGCCCTGAGGGCCTGGTCCATCTGCTGTCTGGCAT
TTCACATTAATTATCCATTTTCCTGATCTTTACTCTTGTTACCATAAAAT
GTTTACTTATTAACCTCGAAAATCTTTGCGCCTATGTTACATCTCCTCGT
ATATTTTGCAACTAAGAATTTGCTAGTGCCTTCTCTTCCCATCGTTCCTA
TCTTAAGAGTTATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_f01.g1 MSMg01no315_f01.g1 CHROMAT_FILE:
MSMg01no315_f01.g1 PHD_FILE: MSMg01no315_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:44 2005
         (297 letters)



>mm_chr19_32069349_32070044
          Length = 696

 Score =  513 bits (265), Expect = e-150
 Identities = 289/297 (97%), Gaps = 1/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagagaaccaggtgagcatcactgtcttccacgtttataccaagtttcccttcacttt 60
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 496 agcagagaaccaggtgagcatcgctgtcttccacgtttataccaagtttcccttcatttt 437

                                                                       
Query: 61  acaggagacaccgcacatccaaacatatatcagggttttttttctttttctttatttgtg 120
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 436 acaggagacatcgcacatccaaacatatatca-ggttttttttctttttctttatttgtg 378

                                                                       
Query: 121 gaggtgggaaaatgttcagtgggtacagctagggtggaattggatgtagagatcagagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaggtgggaaaatgttcagtgggtacagctagggtggaattggatgtagagatcagagcc 318

                                                                       
Query: 181 catgaagatttaatcaacttcttctagtgccacacgtagaataactcctccaggactaca 240
           ||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||
Sbjct: 317 catgaagatttaatcaacttcttctagtgccacatatagaataactcctccatgactaca 258

                                                                    
Query: 241 ctgcttcctcagaagttataaattcagagacattctcatttacatatttaaatttag 297
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgcttccccagaagttataaattcagagacattctcatttacatatttaaatttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 696
Length adjustment: 9
Effective length of query: 288
Effective length of database: 687
Effective search space:   197856
Effective search space used:   197856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)