Query= MSMg01no316_b24.b1 MSMg01no316_b24.b1 CHROMAT_FILE:
MSMg01no316_b24.b1 PHD_FILE: MSMg01no316_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:48 2005
(681 letters)
>mm_chr19_31451424_31452504
Length = 1081
Score = 1156 bits (598), Expect = 0.0
Identities = 658/678 (97%)
Strand = Plus / Minus
Query: 4 ggaattccataccttacctgcacaggaaaggagaactacaaggcaccccggactgcacag 63
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ggaattcaataccttacgtgcacaggaaaggagaactacaaggcaccccggactgcacag 822
Query: 64 ggaaagctgcccaatacagtaggggtgtggaaggagcaaaaggaagccgcccattcttca 123
|||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 821 ggaaagctgcccaataaagtagaggtgtggaaggagcaaaaggaagccgtccattcttcg 762
Query: 124 gccctcttcctgtcatcagctgggaggtttctggaaggcagtgtcctgctggtacgatgt 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 761 gccctcttcctgtcatcagctgggaggtttctggaaggcagcgtcctgctggtacgatgt 702
Query: 184 tttaaaggagcacattcggaattcaatcatctctgaagttgtcctgataaatcctgatta 243
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 701 tttaaaggagcacattcgcaatccaatcatctctgaagttgtcctgataaatcctgatga 642
Query: 244 aatccttgtccatctgcttgttcaagcatagcgcttgctcattccctgactctcaaacac 303
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aatcctagtccatctgcttgttcaagcatagcgcttgctcattccctgactctcaaacac 582
Query: 304 tctcttcagtctgtactcttgccgtggcctctttttcctaacaccctttttgtcactttt 363
|||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 581 tctcttcagtctgtcctcttgccatggcctctttttcctaacacccttattgtcactttt 522
Query: 364 cacttcctgactcagagattaattaaaagcaccagtgggtcctcagaaccccaccttccc 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cacttccttactcagagattaattaaaagcaccagtgggtcctcagaaccccaccttccc 462
Query: 424 accaattcttaaaatatggcctattacatatgaaatagctgtgcagtagcgctgaagatg 483
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 461 accaattcttaaaatatggcctattacatatgaaatagctgtgcagtcgcgctggagatg 402
Query: 484 tcagacaactaaattatgacgtctgcactactctgtctcaccagtctgcacagtttacag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tcagacaactaaattatgacgtctgcactactctgtctcaccagtctgcacagtttacag 342
Query: 544 ttgtgaggacaaaagtgtagaaaagtaaacaaaagaagaaaaggcacacaaaccttgaac 603
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 341 ttgtgaggacaaaagtgtaaaaaagcaaacaaaagaagaaaaggcacacaaaccttgaac 282
Query: 604 cttgttggtaacattgcaatggtttttatggaatttttctggtggatgttttgttagtgc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cttgttggtaacattgcaatggtttttatggaatttttctggtggatgttttgttagtgc 222
Query: 664 ataacaaacttatgaata 681
||||||| ||||||||||
Sbjct: 221 ataacaagcttatgaata 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_b24.g1 MSMg01no316_b24.g1 CHROMAT_FILE:
MSMg01no316_b24.g1 PHD_FILE: MSMg01no316_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:48 2005
(286 letters)
>mm_chr19_31274305_31274989
Length = 685
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%), Gaps = 1/286 (0%)
Strand = Plus / Plus
Query: 1 tgaaattagctataacatccaagcctaagtagaacttggtaatgtttacacactgtgtct 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgaaattagctataacatccaagcctaagtagaacttggtaatgtttaca-actgtgtct 259
Query: 61 tttttcacctttggtggttaaaaaaataaaatccttctactaaaaccaagatgtaaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttttcacctttggtggttaaaaaaataaaatccttctactaaaaccaagatgtaaatct 319
Query: 121 tgctattgttcctgacctcagacagaagccacccaaacaagtcaaatcagagatagtaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgctattgttcctgacctcagacagaagccacccaaacaagtcaaatcagagatagtaat 379
Query: 181 ttttggcattgacttcaggtctgaatcaaaatctctcccacccccaaatttaaactcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttttggcattgacttcaggtctgaatcaaaatctctcccacccccaaatttaaactcaac 439
Query: 241 agattttattgtttgtttgtttttgttttttaaatgtctggtacta 286
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggttttattgtttgtttgtttttgttttttaaatgtctggtacta 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space: 187252
Effective search space used: 187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
