BAC Information

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BAC

Clone NameMSMg01-317F12
Chromosome19 (Build37)
Map Location 40,021,423 - 40,021,714
singlet/doubletsinglet
Overlap genenone
Upstream geneHells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108
Downstream geneLOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317F12.T7 (MSMg01no317_f12.b1)MSMg01-317F12.TJ (MSMg01no317_f12.g1)
ACCAG437441AG437442
length741739
length of high quality
(start - end)
667 (73 - 739)297 (78 - 374)
definitionCHROMAT_FILE: MSMg01no317_f12.b1 PHD_FILE: MSMg01no317_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:21 2005CHROMAT_FILE: MSMg01no317_f12.g1 PHD_FILE: MSMg01no317_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAACTTTGCAATCTCAAATAATTTAGAAGCACTTAAAGAAA
TATTCAAAACCCTTAGTCATCATGGAAATGCAAATCAAAGCAACCCTGAG
ATTACACCTTGTACCAGTCAGAATGTCTAAAATCAAAAACTGAGATGACA
GCAGATGCTGGTGACGATGTGGAGAAAGAGCAACACTTCTCTATTGTTGG
TGGGATTACAAGCTGGTACAACCACTCTTGAAATCATTCTGGTGATTCCT
CAGAAAATTGAAATAGTTCTATTTGAGGACACAGCTATAACACTCCTGGG
AATATACCAAAAAGATTCTCCAACATATACAAAGAATACATACACCACTA
TGTTCATAGCAGTGTTATTTATAACATTCATAAGCTTGAAACAACCTAGA
TGTGCCTCAACAGAGGAAAGGATATAGAAACTGTAGTACATTTACACAAT
GAAATAGTACTCATCTAATATCACATAAAATTGACTTTCAACCAAGAGTT
ATCAAGAAAAGATAAGAAAGGACACTTCACAGACCTCAAAGGAAACATCT
ACCAAGATGAACTCTCAATTCTGAACTTCTATGCCCCAATTACAAGAACC
CCTATAACTGTATAAGAAACATTACTAAAGCTCAAGGCACACATTGAACC
TCACACAATGATTATGGGAGACTTCACTCTCCACTCTCACN
TACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACAGCTCTCTTGTTAGTGTT
ACGGAATTCTTTCCAATCAAAGTTCAACAATATCAGCCTGTTTACTCATC
TACTTACCTACATGGACTTTATGTCTATTGGAGAGTTTTGATGTTTTTAT
TTTATTTGCTTTATTTTTAATTTTTTCCCAGTTTTTCTATATAGCTGAGC
CTTGAGGGGAGTGACAGAGCCAAGAAATAGATTCAAATTATGGTTAATTT
TTTTTTATGTTAACTATGGTGATTGATGAAAGGCTAAGTGACATTTATTC
TCTAGGATAATGTTCTTTTTGCCCCCCCCCCCCCATAAAAATTTCAGTGA
ACATTTTGATGGCTAGAAATGCCCTCCTTTCATATTTTTTCTTTGTGTTT
ATTTTTCTCTCATATAATACATTCTGACAGGATCCTCTCCTCTCTCTACT
CCTCCCATTCTGATCAATGGCCCCTCTCTTTGCCTCACAAATGCCAAAAA
ACAAAAAAAACCCAAACTGTCTTCCCAAGGTTATGAACATAGTGAATCCT
TAATATTTGATTCTGTGTCATCATTATCAAGGACAGTGCATGGGCACTGG
AGTAATGCTGCAGATCATGAACAAATTGCAAGTCTACCAGCAATTGGGGG
TCACTCGATAAGTCCCACAGATCTTCACGTCACTGGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_f12.g1 MSMg01no317_f12.g1 CHROMAT_FILE:
MSMg01no317_f12.g1 PHD_FILE: MSMg01no317_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:21 2005
         (297 letters)



>mm_chr19_40021223_40021917
          Length = 695

 Score =  542 bits (280), Expect = e-158
 Identities = 290/294 (98%), Gaps = 2/294 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccacagctctcttgttagtgttacggaattctttccaatcaaagttcaacaatatcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tccacagctctcttgttagtgttacggaattctttccaatcaaagttcaacaatatcagc 433

                                                                       
Query: 61  ctgtttactcatctacttacctacatggactttatgtctattggagagttttgatgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 432 ctgtttactcatctacttacctacatggactttatgtctattggagagttttggtgtttt 373

                                                                       
Query: 121 tattttatttgctttatttttaattttttcccagtttttctatatagctgagccttgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tattttatttgctttatttttaattttttcccagtttttctatatagctgagccttgagg 313

                                                                       
Query: 181 ggagtgacagagccaagaaatagattcaaattatggttaatttttttttatgttaactat 240
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 312 ggagtgacagagccaagaaatagattcaaattatggttaa--tttttttatgttaactat 255

                                                                 
Query: 241 ggtgattgatgaaaggctaagtgacatttattctctaggataatgttctttttg 294
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 254 ggtgattgatgaaaggctaagtgacatttattctctaggataatgctctttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 695
Length adjustment: 9
Effective length of query: 288
Effective length of database: 686
Effective search space:   197568
Effective search space used:   197568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)