BAC Information

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BAC

Clone NameMSMg01-318O02
Chromosome19 (Build37)
Map Location 27,706,300 - 27,706,641
singlet/doubletsinglet
Overlap genenone
Upstream geneSmarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318O02.T7 (MSMg01no318_o02.b1)MSMg01-318O02.TJ (MSMg01no318_o02.g1)
ACCAG438553AG438554
length717716
length of high quality
(start - end)
321 (44 - 364)344 (71 - 414)
definitionCHROMAT_FILE: MSMg01no318_o02.b1 PHD_FILE: MSMg01no318_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:08 2005CHROMAT_FILE: MSMg01no318_o02.g1 PHD_FILE: MSMg01no318_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATGATCTTGCGCCCACTGTCGTACTTCTCTGGCTGTGAAATGAGTT
CCTTGGTCAGAAGCAATACTGTGTGGAATACCATGACGATAGATAAGGCA
TTCTGTCAGTCCGTGAATGGTGGTTTTAGCAGAGGCATTACGTGCAGGAA
AGGCAAATCCATAACCAGAATAAGTATCTACTCCAGTAAGAACAAAACGC
TGTCCTTTCCACGAAGGAAGTGGTCCAATGTAGTCAACCTGCCACCAGGT
TGCTGGCTGGTCACCTCGAGGATTGGTGCCATATCTGGGGCTCAGTGTTG
GTTTCTGCTGTTGGTAGATCTGGCAATCAGCAGCAGCTGTAGCCAGGTCA
GCTTTGGTGAGTGGCACCCCCCTTGCTGAGTCCAAGCATAACCTCTATCT
CGACCACCATGGCCACTTTGTTCATGTGCCCATTGAGCAATGACAGGTAT
GGCTGGTGAGAGAGGCTGACTGTCCACAGAACGGGTCATCTTATCCACTT
GATTATTGAACTCCTCCTCGGCTGAAGTCACCTTTTGATGAGCATTTACA
TGTGACACAAACATCTTCACATCCTTTGCCCATTTGGAGAGATCTATCCA
CTTACTTCTTCCCCAGATGTTTTTCTCACCCATTTTCCAATTGTGATTCT
TTCCAAGTCCCTGACCA
GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTAGCTAGGTTTGTCTCCTTGGAAACACT
CCTGTTTGCATATCTAACATTTTCTCTAGTAAGATGACAAAGCCGAACAA
TGGTGCAACATAATGAGGATTAGTTTAGGTTTGGAAAAATTGATTGACGA
CTCTTACACTGACTACTTCCCTAGCAATGTTCTAAAATGTTCTAAGACCT
TCAGTGCATCAATTTCTAATCTCCCTAATGCCCATGAAATGGGTAATATG
CTTATCCTAACTTTATAGGTGAATTAACCAAGACAGGAAGAAGAGAAGTG
CCAGGGCTTATGTATGATAAAGCTACACTTACCATGTGTGTATTCTCCCA
AAATGTATATGCCCCCCCCCCACGTCCTAATTTGATAGCACTAAGAGAAG
TTGGCTGTCCGAGGCAATAAGACCATGTTGTAATCTTCTTTCAAGCACCG
ATTCAGCCATATGTGGTGTTGGGGTCGATAAAGAGTTGTGGTGACTGCAG
AAAGATTCACCCCAGGATCTTTGAGACAGCACTCTCCATTGGGGTGCATA
CAGGTAATCTTCTATGTGAAAGATGCTTATCAATGAGCATTGAGTAGCTT
GTGTTATCTGGAGTACTAAAAATGAACCATTTACTGGAATTAAGGTATAA
AACTATGGTGCATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_o02.g1 MSMg01no318_o02.g1 CHROMAT_FILE:
MSMg01no318_o02.g1 PHD_FILE: MSMg01no318_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:08 2005
         (344 letters)



>mm_chr19_27706100_27706843
          Length = 744

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagctaggtttgtctccttggaaacactcctgtttgcatatctaacattttctctagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 actagctaggtttgtctccttggaaacactcctgtttgcatatctaagattttctctagt 260

                                                                       
Query: 61  aagatgacaaagccgaacaatggtgcaacataatgaggattagtttaggtttggaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatgacaaagccgaacaatggtgcaacataatgaggattagtttaggtttggaaaaat 320

                                                                       
Query: 121 tgattgacgactcttacactgactacttccctagcaatgttctaaaatgttctaagacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattgacgactcttacactgactacttccctagcaatgttctaaaatgttctaagacct 380

                                                                       
Query: 181 tcagtgcatcaatttctaatctccctaatgcccatgaaatgggtaatatgcttatcctaa 240
           || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tcggtgcatcaatttctaatccccccaatgcccatgaaatgggtaatatgcttatcctaa 440

                                                                       
Query: 241 ctttataggtgaattaaccaagacaggaagaagagaagtgccagggcttatgtatgataa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttataggagaattaaccaagacaggaagaagagaagtgccagggcttatgtatgataa 500

                                                     
Query: 301 agctacacttaccatgtgtgtattctcccaaaatgtatatgc 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctacacttaccatgtgtgtattctcccaaaatgtatatgc 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)