Query= MSMg01no319_d05.b1 MSMg01no319_d05.b1 CHROMAT_FILE:
MSMg01no319_d05.b1 PHD_FILE: MSMg01no319_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:30 2005
(296 letters)
>mm_chr19_4177391_4178086
Length = 696
Score = 507 bits (262), Expect = e-148
Identities = 277/282 (98%)
Strand = Plus / Minus
Query: 1 cacccagggacatgggaactgtctctgttctgtcaatcactgcctctctgacccagccat 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 446 cacccagggacatgggaactgtctctgttctgtcaatcactgcctcactgatccagccat 387
Query: 61 ccctctcacctgtctctaggatgtcctctcctcatagccaagagtattgcagctttccct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 386 ccctctcacctgtctctaggatgtcctctcctcatagccaagagtattgcagcttttcct 327
Query: 121 ctatatttatgacagtatctatcaatttggggctaacatgccttgattctcttgtacctc 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctatattcatgacagtatctatcaatttggggctaacatgccttgattctcttgtacctc 267
Query: 181 tttatgagttcttacatttaattactgattggtaagcagcagcttcctacacagtagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttatgagttcttacatttaattactgattggtaagcagcagcttcctacacagtagaag 207
Query: 241 actgccatatatatatatatatatatatatatatatatatat 282
|||||||| |||||||||||||||||||||||||||||||||
Sbjct: 206 actgccatgtatatatatatatatatatatatatatatatat 165
Score = 70.3 bits (36), Expect = 1e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 247 atatatatatatatatatatatatatatatatatat 282
||||||||||||||||||||||||||||||||||||
Sbjct: 157 atatatatatatatatatatatatatatatatatat 192
Score = 70.3 bits (36), Expect = 1e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 247 atatatatatatatatatatatatatatatatatat 282
||||||||||||||||||||||||||||||||||||
Sbjct: 159 atatatatatatatatatatatatatatatatatat 194
Score = 70.3 bits (36), Expect = 1e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 247 atatatatatatatatatatatatatatatatatat 282
||||||||||||||||||||||||||||||||||||
Sbjct: 161 atatatatatatatatatatatatatatatatatat 196
Score = 68.4 bits (35), Expect = 5e-16
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 248 tatatatatatatatatatatatatatatatatat 282
|||||||||||||||||||||||||||||||||||
Sbjct: 156 tatatatatatatatatatatatatatatatatat 190
Score = 68.4 bits (35), Expect = 5e-16
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 247 atatatatatatatatatatatatatatatatata 281
|||||||||||||||||||||||||||||||||||
Sbjct: 163 atatatatatatatatatatatatatatatatata 197
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 127
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 8
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no319_d05.g1 MSMg01no319_d05.g1 CHROMAT_FILE:
MSMg01no319_d05.g1 PHD_FILE: MSMg01no319_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:30 2005
(340 letters)
>mm_chr19_4009656_4010399
Length = 744
Score = 646 bits (334), Expect = 0.0
Identities = 340/344 (98%), Gaps = 4/344 (1%)
Strand = Plus / Plus
Query: 1 ccctcggatgtagatataggcggcccgggctcccatggcccggcctcccacaaggcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctcggatgtagatataggcggcccgggctcccatggcccggcctcccacaaggcagcc 260
Query: 61 ttccaccagcttgtgagggtcatgacgcatgatctctcggtccttacaggtgcctggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccaccagcttgtgagggtcatgacgcatgatctctcggtccttacaggtgcctggctc 320
Query: 121 tccctcgtcagcattcaccaccagatacttgggcctgtggggtcctgcac----gtcagg 176
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tccctcgtcagcattcaccaccagatacttgggcctgtggggtcctgcacatcagtcagg 380
Query: 177 ctacagacccaccaggacccagttctcaaacttcattccgtctacactcagagaagcctc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacagacccaccaggacccagttctcaaacttcattccgtctacactcagagaagcctc 440
Query: 237 aaggcagttgatcttctgtgccctacccaaggctctctttgtgtcacaccgatgacagga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggcagttgatcttctgtgccctacccaaggctctctttgtgtcacaccgatgacagga 500
Query: 297 ctctgcctatttcatccgtgaccacgtatgtccacaagataagc 340
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgcctatttcatccgtgaccacgtatgtccacaagataagc 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 744
Length adjustment: 9
Effective length of query: 331
Effective length of database: 735
Effective search space: 243285
Effective search space used: 243285
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
