Query= MSMg01no320_k03.b1 MSMg01no320_k03.b1 CHROMAT_FILE:
MSMg01no320_k03.b1 PHD_FILE: MSMg01no320_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:11 2005
(121 letters)
>mm_chr19_24427182_24427708
Length = 527
Score = 211 bits (109), Expect = 1e-59
Identities = 119/125 (95%), Gaps = 6/125 (4%)
Strand = Plus / Plus
Query: 1 gaaagcctgtaatacatgctgtatttttt-ggaaccaaagaagctattgtactgcattaa 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gaaagcctgtaatacatgctgtatttttttggaaccaaagaagctattgtactgcattaa 260
Query: 60 ggaaagaaaaacaaaacaaaacaccccccccc-----aaaaaaaacccaaaccaaccaac 114
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ggaaagaaaaacaaaacaaaacaccccccccccaaaaaaaaaaaacccaaaccaaccaac 320
Query: 115 caacc 119
|||||
Sbjct: 321 caacc 325
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 527
Length adjustment: 8
Effective length of query: 113
Effective length of database: 519
Effective search space: 58647
Effective search space used: 58647
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no320_k03.g1 MSMg01no320_k03.g1 CHROMAT_FILE:
MSMg01no320_k03.g1 PHD_FILE: MSMg01no320_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:11 2005
(234 letters)
>mm_chr19_24585893_24586526
Length = 634
Score = 414 bits (214), Expect = e-120
Identities = 229/234 (97%)
Strand = Plus / Minus
Query: 1 gtgtgtgggctggcagcaggcaggaagagatctggaggagagacccgacaatgattaggg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 434 gtgtgtgggctggaagcaggcaggaagagatctggaggagagacccgacaatgataaggg 375
Query: 61 tctgccacgagaacataggctgcttcctgggctgaattgagttcccttattctgcatggt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tctgccacaagaacataggctgcttcctgggctgaattgagttcccttattctgcatggt 315
Query: 121 gaaggcaggttctggctgggaacctggactactgtcccctcaggacaatatggccgaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaaggcaggttctggctgggaacctggactactgtcccctcaggacaatatggccgaggc 255
Query: 181 atggtaatggaacctatactacaacttattatagactaaggtggaatgtggcaa 234
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 254 atggtaatggaacctatactagaacttattagagactaaggtggaatgtggcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
