BAC Information

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BAC

Clone NameMSMg01-321D15
Chromosome19 (Build37)
Map Location 14,490,593 - 14,490,888
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433
Downstream geneTle4, EG433225, EG635497, Pomc-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321D15.T7 (MSMg01no321_d15.b1)MSMg01-321D15.TJ (MSMg01no321_d15.g1)
ACCAG440254
length729728
length of high quality
(start - end)
---291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no321_d15.b1 PHD_FILE: MSMg01no321_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:55 2005CHROMAT_FILE: MSMg01no321_d15.g1 PHD_FILE: MSMg01no321_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAAATGCAATTAAATGCCCAATTGCCC
CGTCAGCCATCATTAATAATTCCTGCAGGATAGGAGCAGCTTTTATGATG
CATTTTAGATCCCTTTGAACCCAGAAGAATCTGCCTCAAATTGAACTGGC
AGTATGCAGGGTAGGATGCCTGGAGCTGGAAGCTACAAGAGACATGATGT
AATTACCAAAGCATGTCAGATTCTTTATTGTGATGATAAACTAGACATCA
GATGCCAGCAGATAGCTTATTATAAAAACTGGAGCAAAGGAAGTTAGGGA
GGATCTGGAGGATGAAATTGAGCACGGCGAGTGGTTCAAAATTCACTCTG
TTAATTCCAACCATCGCCACCCCCCTTTCGTCCTGTTTGTTTTAGTAATA
ACTAGCACTGGCGCGGGCTACAGGGGAACTATGCTGGACCATGCCGAACT
CTTACAAGCCAAAGAAATAGTCAGTTAGGACAACTGGGAAAAGCTTGTGG
GAAATGAACGGAGAGTCCTCCTTATCCTGTCTTTTAGCCTGCGACCCTAG
TGACAACATATTGCGTTTTCAGTTTCTTCCCGGTGACTTTGGCCTCTTCT
GATGGGTTAGTTTCATGAAGATGGAAATGTTAGCAGTTATTCTTAGGTTG
CCCATCCAGGGCTTGTGTGCCTATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_d15.g1 MSMg01no321_d15.g1 CHROMAT_FILE:
MSMg01no321_d15.g1 PHD_FILE: MSMg01no321_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:55 2005
         (291 letters)



>mm_chr19_14490443_14491133
          Length = 691

 Score =  503 bits (260), Expect = e-147
 Identities = 285/298 (95%), Gaps = 9/298 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatgcaattaaatgcccaattgccccgtcagccatcattaataattcctgcaggatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 446 taaatgcaattaaatgcccaattgccccgtcagccatcattaataatttttgcaggatag 387

                                                                       
Query: 61  gagcagcttttatgatgcattttagatccctttgaacccagaagaatctgcctcaaattg 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 386 gagcagcttttatgatgcattttagacccctttgaacccagaagaatctgcctcaaattg 327

                                                                       
Query: 121 aactggcagtatgcagggtaggatgcctggagctggaagctacaagagacatgatgtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aactggcagtatgcagggtaggatgcctggagctggaagctacaagagacatgatgtaat 267

                                                                       
Query: 181 taccaaagcatgtcagattctttattgtgatgataaactagacatcagatgccagcagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taccaaagcatgtcagattctttattgtgatgataaactagacatcagatgccagcagat 207

                                                                     
Query: 241 agctt-------attataaaaactggagcaaaggaagttagggaggatctggaggatg 291
           |||||       |  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agcttaaaaaaaa--aaaaaaactggagcaaaggaagttagggaggatctggaggatg 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)