BAC Information

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BAC

Clone NameMSMg01-321H10
Chromosome19 (Build37)
Map Location 21,441,411 - 21,441,772
singlet/doubletsinglet
Overlap genenone
Upstream geneAnxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5
Downstream geneGda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229, Trpm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321H10.T7 (MSMg01no321_h10.b1)MSMg01-321H10.TJ (MSMg01no321_h10.g1)
ACCAG440426AG440427
length742746
length of high quality
(start - end)
582 (43 - 624)488 (74 - 561)
definitionCHROMAT_FILE: MSMg01no321_h10.b1 PHD_FILE: MSMg01no321_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:12 2005CHROMAT_FILE: MSMg01no321_h10.g1 PHD_FILE: MSMg01no321_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTAGTGCTACCAATGGGTTATATTTAATCAAGTTGGCCAAAGAGGCC
CATAGAAATTCCCAAACAACCCAGGCTACCATGGAAGCTACAGGTTGTTC
TCCACAAACCGATGGCAATGCTCTATTGTTGAAGACAACACCTACATAAC
TTATTGACCAAGGAGAAGTTGAGCTGGTGCCAATGTAGAGCCTTCACCCC
TACTGACTAGTGTTCCTGGTACTGTAAGGGACTCTGTATGTTACCAGCCT
AGAAAGATAAATATCAACCCAGCTACAAACCCTTCAGTCTACAATGGTGA
GCTGCCTGCAGTGGGCACTGGTGCAATAGTAGCACAAACATCGTGGAAGT
AATCAATAACTACCTGACCGGATTTAAGGATCACTCCATGAGATGGGATC
CATGTACAACACTGCTCGGGTAGGAAGAACCTGAGACTTGATAGACTATA
GTGTAGGGGAAAACTAAACATGATTGTTCTGTCAAAGTCGCATATCAATA
TAACCCTTAATGACATTTTACTATACTCATAGATCAGTGTCTTGCTCAGT
CATTATCAGAGAAGCTGCCTCCTGCAGTAGATGTAAGCAAATACAGAGAC
CAATGTATGGAAAGGAGCTGATACTAAAATCTGGTTTCCTCAATGGTTCT
TGATTTGGTCATTAAAGAAGTTGAGAGACAATTGCTGGGTAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAACTCTATTCTGTTGGAATTCCGGA
AACATAAAATCAATAGCAACCATAAAACCCTATAGGGCTGGACTAAATTT
ATTCAGGTAAAAATGCTACCTAATTTACTTTCCTTAATTGCTTTATTATT
ATTATTGTTGTTGTTTGTTGCTTTTTACGTGTGTTATTTAGCTTTTGTTA
TTTGCTATTTGTTTTTGTTTGAGACAGGGTCTCACTATGGAGTTCTGGCT
GTCCTGGAACTCAATGTGTATACTAGGCTGGCTTCAAACTTCTGCCGCCT
CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCT
GCCTCTGCCTCTGCCCCCGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGC
CTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCT
CTGCCTCTGCGCCTCTGCCTCTGCCTCTGTGCCCCTGCGCCCCTGCCCCT
GCCCCTGCCCCCCAAGTGCTAGGATTATGAGCATGCTCCACCATGTCCAG
CAAACTCTGCTTAGTTGTTTTTAATAAAACACATGAATGTGCAAAAACAA
ATCATGTTTATCACGATGTTTTGTTTGTTAAGATTCTCCCTGTATTGTTA
CCCCTGACAAAAGACTGTGTTCTGTATAAAGTTTATAGGTCACGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_h10.g1 MSMg01no321_h10.g1 CHROMAT_FILE:
MSMg01no321_h10.g1 PHD_FILE: MSMg01no321_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:12 2005
         (488 letters)



>mm_chr19_21441373_21442258
          Length = 886

 Score =  426 bits (220), Expect = e-123
 Identities = 311/362 (85%), Gaps = 36/362 (9%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataactctattctgttggaattccggaaacataaaat------------caatagcaacc 48
           ||||||||||||||||||||||||  |||||||||||            |||||||||||
Sbjct: 400 ataactctattctgttggaattccaaaaacataaaatcaatagtaatcacaatagcaacc 341

                                                                       
Query: 49  ataaaaccctatagggctggactaaatttattcaggtaaaaatgctacctaatttacttt 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ataaaaccctatagggctggactaaatttattcaggtaaaaatgctacctaatttacttt 281

                                                                       
Query: 109 ccttaattgctttattattattattgttgttg--------tttgttgctttttacgtgtg 160
           | ||||||||||||||||| || |||||||||        |||||||||||||| |||||
Sbjct: 280 cgttaattgctttattattgttgttgttgttgttgttgtttttgttgctttttatgtgtg 221

                                                                       
Query: 161 ttatttagcttttgt----tatttg----------cta--tttgtttttgtttgagacag 204
           |||||||||||||||    ||||||           ||  ||||||||||||||||||||
Sbjct: 220 ttatttagcttttgtttgctatttgttttttagttttatttttgtttttgtttgagacag 161

                                                                       
Query: 205 ggtctcactatggagttctggctgtcctggaactcaatgtgtatactaggctggcttcaa 264
           ||||||||| |||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 160 ggtctcactctggagttctggctgtcctggaacttactgtgtagactaggctggcttcaa 101

                                                                       
Query: 265 acttctgccgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcc 324
           ||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||||
Sbjct: 100 acttctgcctcctctgcctctgcctctgcctctgcctctgcctctacttctgcccctgcc 41

             
Query: 325 tc 326
           ||
Sbjct: 40  tc 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 886
Length adjustment: 10
Effective length of query: 478
Effective length of database: 876
Effective search space:   418728
Effective search space used:   418728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)