BAC Information

Click to search

BAC

Clone NameMSMg01-321N01
Chromosome19 (Build37)
Map Location 51,523,593 - 51,523,866
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321N01.T7 (MSMg01no321_n01.b1)MSMg01-321N01.TJ (MSMg01no321_n01.g1)
ACCAG440684AG440685
length745751
length of high quality
(start - end)
374 (49 - 422)275 (78 - 352)
definitionCHROMAT_FILE: MSMg01no321_n01.b1 PHD_FILE: MSMg01no321_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:38 2005CHROMAT_FILE: MSMg01no321_n01.g1 PHD_FILE: MSMg01no321_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGCGGA
ATTCTCACCTGATTATCCCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGAGTATCCAGCAATACCTCTCTTGGACATA
TATCCAGAAGATGCCCCAATTGGTAAGAAGGACACATGTTCCACTATGTT
CATAGCAGCCTTATTTATAACACCCCGAAGCTGGATAGAACCCTGATGCC
CCTCAACAGAGGCAATGGATACTGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGATTTTCCTAGGCAAAT
GGATGTTACCTGGATGGTTTCATCCTGAGTGATGCATTATCCTCCCTTAT
GGATCTCCCTCCATATAGACTTCACTGATAAGCTGGATATTTATCCCATA
ACCCTATGATACCCCTCAAAGTTTCATTCATTCTCCTAAACTCATCGAAA
CTCCATTATTAATGTAAGATTGTATTTGTGTTATTCCATGCCCCC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTCCGAATAAACAAATTCATCTGGAAATTTATGTA
TAAGTACTAAATAAAATATTTTTTAACCCCGAAGGAAAAATAAATAAGAA
ACTTAAAGAACTAAATTTGCAGCTCCCACCTCATCACATGTCAATGATCA
AATGATTTTTCTTTATAAAATATCAACTTTACAAGCCAGAAAATGTGGAC
CATTCAAAAAGAAAATTATTCCACTAAATGCAACTAGAGTCTATAAAAAT
AAGTTCTGGAAAATCTATGAAACAAAAGCTTATAACCACATACATGACAT
ATTTTAAAAAAAAAGAAAGTATGTTTAAAGTTTTCACAATGTATGAACAG
AACAGAAATATAAATAAATACAGAAAACCTAAATCTGCAAAAGAAAAATG
AACTCTATGGCTGACAAATATAACAACTAAATCAAAATTAACTTGTTGGA
TTCAACAGCAAATTTTTACAGATTAAAGGATATTGATATTGTACTGCATC
AAAAAGAATTGCATATTTATACTGCTTTTATTTTAGTTCCAGAATAATAA
ATAAAGGGTATAAAAGATAGGAATATAACTTGAAAGACTTAGGAGATATT
AAGCAATGGTCAGAGAAAATATTTTAATGAACCAGTGCCTAAAAAGTTTC
TAATGCCATTGAAAAAATATAAATTTTAAGTCTTGTTGAAGATCTTCACA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_n01.g1 MSMg01no321_n01.g1 CHROMAT_FILE:
MSMg01no321_n01.g1 PHD_FILE: MSMg01no321_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:38 2005
         (275 letters)



>mm_chr19_51523393_51524067
          Length = 675

 Score =  429 bits (222), Expect = e-125
 Identities = 261/274 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattcatctggaaatttatgtataagtactaaataaaatattttttaaccccgaaggaa 60
           |||||||||||||||||||||||||||||||||| ||||||||||  |||   |||||||
Sbjct: 201 aaattcatctggaaatttatgtataagtactaaagaaaatattttaaaactttgaaggaa 260

                                                                       
Query: 61  aaataaataagaaacttaaagaactaaatttgcagctcccacctcatcacatgtcaatga 120
           |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 261 aaataagtaagaaacttaaagaaccaaatttgcagctcccacctcatcacatgtaaatga 320

                                                                       
Query: 121 tcaaatgatttttctttataaaatatcaactttacaagccagaaaatgtggaccattcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaatgatttttctttataaaatatcaactttacaagccagaaaatgtggaccattcaa 380

                                                                       
Query: 181 aaagaaaattattccactaaatgcaactagagtctataaaaataagttctggaaaatcta 240
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaaaattattccattaaatggaactagagtctataaaaataagttctggaaaatcta 440

                                             
Query: 241 tgaaacaaaagcttataaccacatacatgacata 274
           |||||||| |||||| ||||||||||||||||||
Sbjct: 441 tgaaacaagagcttaaaaccacatacatgacata 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)