BAC Information

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BAC

Clone NameMSMg01-321O04
Chromosome19 (Build37)
Map Location 8,990,790 - 8,991,070
singlet/doubletsinglet
Overlap geneGanab
Upstream geneAB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5
Downstream geneB3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321O04.T7 (MSMg01no321_o04.b1)MSMg01-321O04.TJ (MSMg01no321_o04.g1)
ACCAG440735AG440736
length736740
length of high quality
(start - end)
282 (455 - 736)48 (178 - 225)
definitionCHROMAT_FILE: MSMg01no321_o04.b1 PHD_FILE: MSMg01no321_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:43 2005CHROMAT_FILE: MSMg01no321_o04.g1 PHD_FILE: MSMg01no321_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTTGTTACCTACACTATCCTTCTGTGCGTTACCAAGCCCTTCA
TACTCAGTATCCTGTTGCTGTACCTGGAGCACAGTCGTTTGTGAAGACCA
AGGGGCCTTGTCGGTCTTTTTCTCTTCCTTAGGGGCCCTACCTTCTCCTT
AGACCCCATCTATTCAAGCCTCTTGTTTGATGATGCCATTTCGTGGAAGA
GGATGAGGGAAGTGAACATTAGGGTTCCTTTTCTGCTTCCCTGTTCCCTC
GTATCCGAAATGCCCATCCTTGCGTTCCTTCCCCTGAATGTCCCCTTCTC
TGTTCCACTGATATTTTGGGACCACCCCTCCCCTGGCAAGGGACGAATGG
ATCTAGATTGAGGTTCCTGAACAACGACATCTTACTTCTCATCTCAACGT
TGGCGTCCTGTTTCTTTCCAGAGCTGCTGCATTTCTCCCATCTTAGAGGG
AGACGCTTCCACACAATTAGGAGGGCAAGGTTATTAAACTTCTTTTGCCC
CTCTGGTCCCCTTGGGACACTCAAGATAGAGACATGAGTTGTGGTTTCAC
TGAATCACGGGCACCTGTATTTATTGCTGGGAAGAAGACTGAGGGTGGGG
GGAGACGATCATGTGTACCCAGGGGTGGCTTCAAGCCCTGGTAAGCGGGT
TGAGGGAGGACTCAGGAACCAGGAGAACTATTTGTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGGCAGAACATTTGAGACAAGG
TGAGAAGTGGAGGCAAACAGTAGGAAATCATGTTCCCAAGCAGACAGTAC
AATCCAAAGAGCACAGTGGTTGCAGGGAACATGGTGATGAGGTGGGAGGC
TTGCCTGCAAACTGACTGTGCCATCAGACTATATCCCTTGAGTGTCTTCA
TCTTCCAGGCCAGGTTTGGAGATCATGCTGATCTTGGTGAAGGACTGAGT
CACATGTTCCTAGTAACGAGGAACACATCACTACTGGACATGGTGGAGGG
ACATTCTGGTAGAAAGCAAGACTCCCAGAGGCCTCCTTCTTGTCCCTATA
CTGCATAAAGCACCCAGACTGACCGCTTCAGGTACACACTCTGCTACAAT
GATGGCACAAACAATGGCCAACCCAAGCCAAGAATCCAGAGGCAGCTCAG
GAAAGCCACAAAAGCTGTGACCTATAAAGTCCTCCCAGGGCCCCTTGGTA
TTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAAGCCCAATAATCG
CTAGTGGGAGGATAGGGCAACAGAGCACATGGAGAGTATAGGGAACTTTC
ATGATAACATTTGAGATGCTCATAAAGAACATATCTAGTACCAGTAATTA
GTTACCTAATTACAATAATTTTAGGATCCGACAGAACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_o04.b1 MSMg01no321_o04.b1 CHROMAT_FILE:
MSMg01no321_o04.b1 PHD_FILE: MSMg01no321_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:43 2005
         (282 letters)



>mm_chr19_8990589_8991270
          Length = 682

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcctgtttctttccagagctgctgcatttctcccatcttagagggagacgcttccacaca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tcctgtttctttccagagctgctgcatttctcccatcttagagggagacgcttccacaca 261

                                                                       
Query: 62  attaggagggcaaggttattaaacttcttttgcccctctggtccccttgggacactcaag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 attaggagggcaaggttattaaacttcttttgcccctctggtccccttgggacactcaag 321

                                                                       
Query: 122 atagagacatgagttgtggtttcactgaatcacgggcacctgtatttattgctgggaaga 181
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 322 atagagacatgagttgtggtttcactgaatcacggtcacctgtatttattgctgggaaga 381

                                                                       
Query: 182 agactgagggtggggggagacgatcatgtgtacccaggggtggcttcaagccctggtaag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agactgagggtggggggagacgatcatgtgtacccaggggtggcttcaagccctggtaag 441

                                                    
Query: 242 cgggttgagggaggactcaggaaccaggagaactatttgtg 282
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cgggttgagggaggactcaggaaccaggagaactatttgtg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)