BAC Information

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BAC

Clone NameMSMg01-321O16
Chromosome19 (Build37)
Map Location 22,254,743 - 22,412,132
singlet/doubletdoublet
Overlap geneTrpm3
Upstream geneLOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneEG433230, Klf9, Smc5, Mamdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321O16.T7 (MSMg01no321_o16.b1)MSMg01-321O16.TJ (MSMg01no321_o16.g1)
ACCAG440758AG440759
length744744
length of high quality
(start - end)
316 (42 - 357)357 (57 - 413)
definitionCHROMAT_FILE: MSMg01no321_o16.b1 PHD_FILE: MSMg01no321_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:46 2005CHROMAT_FILE: MSMg01no321_o16.g1 PHD_FILE: MSMg01no321_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,254,743 - 22,255,054)(22,411,788 - 22,412,132)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTGTCGTGCTGCTATGTCTGTCACATGTTGGTCTCCATGGAACTTGGT
GATCTGAATGTGCTGTGCCCTACTGTTGCCAACTGTTTAACATCCAAAGC
CATTTGGAATTTGTTTACTCCAAGCCATTGTACCAGAACCATGTTAGTAA
CAGAATTGCTGTGTGGAGTTGGAAATGAAATAATATAAAGAGCTTCCAGG
TATGCGCATGAACAGAAATGTGCAGCCCGGACTTTCAGCATCTGCAGGTA
AGTCTCTCCTCGTGTGGACCTGGTCAGCTTGGTGGACCATTGAGGGAGGA
TTCAGATTTATATTACACCCCCACCACTCTCCCTCCAAGTCTCTTCATCC
TTCTCTTTGACCCCCACCCCACAAAAAAAGTTTTACCAAACCCTGCTGTA
GACTCTGAGATAGGCGTACAGAGTTTTCTGGAGTCCTCTTCTTATTTTAT
TTCTCACTCAGGTCAGATACTGCTCTGTGACTTGAGAATAAAGATTGTTC
TTGTTTTCTCAGCATGCAATGAATTTCACCTCTGTATGCTGATCCAATTC
TGTGGATATGTGATAAGAAGCGATCCTATTCCTATTTCACGCCTGTACAT
CATCCCTTTGTCTTTCTAAGTGTTGCTTATATCCCAACAGATTCAACAGC
CCATTCACCTTTCTCTTTCTCCTACTTCTCCCTTACTATATTTT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTACCGCGAAATTCCTCCACGGAGGAGGGGATTTCTTGGACAC
TGCCATCTGGTGGCTACAGTGGGGGATTATTTTTAGACTCCAGTGTTAAC
AATCAAGTATTTGTTTCATGTGGTCATTAATTTAAGGCTCGAAAGGTCCT
CATTGCCATTAACAGAGTAAAAAGTATTAACTTTTATAATAAAGCTTAAA
GTGATAGCAGAATCATAGGCAGTTCTAGCAATGCACAATCAGTCACATTC
CATAGGAAAAAAAACAGTTTGTAAAACAGTTTATCTAGCTTAAGAAATAA
TTTGGTAAATCTCTTATGTAAAAAGATCAAAATAGGAAGATATTTAACCT
TATACTATATACCCCCCCCACGAAATCACCAAATATTTACTTTTCCTTTC
CACATCTATCAGCAATCTAATGTTTTGTTTTGTTTTGTTTTGTTTGTTAT
TTTTAACCCAAATCAGAGCTGAGCAATCCTGTAATAGATTAGCTCGTTTA
TTTCTACCTTCAAAAATGTTACTGAAGCTATTTTTTGAACTGGGTAAATG
TCCGGACACTTAATAGACCATAATGAACAGAACAGTCTTATCCCGCGTCA
TTAAGTTCTTGCCTCGTATGTCCAAATGTACAAGACCAGTTATGTCCTGT
GTAAATGTATATCAACAGACAGGATCTTGTTTTTGTTACCCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_o16.b1 MSMg01no321_o16.b1 CHROMAT_FILE:
MSMg01no321_o16.b1 PHD_FILE: MSMg01no321_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:46 2005
         (316 letters)



>mm_chr19_22254539_22255254
          Length = 716

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgtcgtgctgctatgtctgtcacatgttggtctccatggaacttggtgatct 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgtcgtgttgctatgtctgtcacatgttggtctccatggaacttggtgatct 264

                                                                       
Query: 65  gaatgtgctgtgccctactgttgccaactgtttaacatccaaagccatttggaatttgtt 124
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaatgtgctgtggtgtactgttgccaactgtttaacatccaaagccatttggaatttgtt 324

                                                                       
Query: 125 tactccaagccattgtaccagaaccatgttagtaacagaattgctgtgtggagttggaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactccaagccattgtaccagaaccatgttagtaacagaattgctgtgtggagttggaaa 384

                                                                       
Query: 185 tgaaataatataaagagcttccaggtatgcgcatgaacagaaatgtgcagcccggacttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaaataatataaagagcttccaggtatgcgcatgaacagaaatgtgcagcccggacttt 444

                                                                       
Query: 245 cagcatctgcaggtaagtctctcctcgtgtggacctggtcagcttggtggaccattgagg 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 cagcatctgcaggtaagtctctccttgtgtggacctggtcagcttggtggaccattgagg 504

                       
Query: 305 gaggattcagat 316
           ||||||||||||
Sbjct: 505 gaggattcagat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no321_o16.g1 MSMg01no321_o16.g1 CHROMAT_FILE:
MSMg01no321_o16.g1 PHD_FILE: MSMg01no321_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:46 2005
         (357 letters)



>mm_chr19_22411578_22412334
          Length = 757

 Score =  621 bits (321), Expect = 0.0
 Identities = 339/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  aattcctccacggaggaggggatttcttggacactgccatctggtggctacagtggggga 70
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 555 aattcctcaacggaggaggggatttattggacactgccatctggtggctacagtggggga 496

                                                                       
Query: 71  ttatttttagactccagtgttaacaatcaagtatttgtttcatgtggtcattaatttaag 130
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttatttttagacttcagtgttaacaatcaagtatttgtttcatgtggtcattaatttaag 436

                                                                       
Query: 131 gctcgaaaggtcctcattgccattaacagagtaaaaagtattaacttttataataaagct 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gctcgaaaggtcctcattgccattaacagagtaaaaagtattaacttttataataaagct 376

                                                                       
Query: 191 taaagtgatagcagaatcataggcagttctagcaatgcacaatcagtcacattccatagg 250
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taaagtgatggcagaatcataggcagttctagcaatgcacaatcagtcacattccatagg 316

                                                                       
Query: 251 aaaaaaaacagtttgtaaaacagtttatctagcttaagaaataatttggtaaatctctta 310
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaaaaaaacagcttggaaaacagtttatctagcttaagaaataatttggtaaatctctta 256

                                                        
Query: 311 tgtaaaaagatcaaaataggaagatatttaaccttatactatata 355
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgtaaaaagatcaaaataggaagatatttaaccttatactatata 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)