CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGATCCGCGGA
ATTCCTTAGGTTTTCTTCTCTTCAATCATTCATTCATTCACATTTAAAAA
ATAAGACAAAATAAAAGACAAGATAAAAACAAAAACTATCACATCATAGT
TGAACAAGATAAACCAACAAAAGGAATAAGGTCTAAGCAAAGACAAAACA
ATCAAAGACCTACTCATTCCACATTCAGGTGTGCCTACTGGCTTGCTCAT
CCAGCTAAACTTCAGCTACCATTCTATATCTCCCAGGACCACTTACCCCG
GGGCAGTAGTGCCCATAGTAGGCTTGGCTCTCCCACATCAATCCTAAATC
AAGAAAATGACCCATATACCTGCTTAAAGGCCAATAAAATAAAGACATTT
TCTCGGTTCAGGTTTTCTCCTACACCCCCCCAGGTTTGTGACAACTGACC
AATGCCAACCAGCACATCATGTACTTTACTACTTCAGATATGTAAAACCT
CCCAAAGTACATGACCCAGGAGGTGATGTGCCCCTCATGTCAGAGAGGGA
AACCTAAGGTTCACAGAGCGTAAGTATTGGGGCAGACGGAAGTGGTACCC
TTAATATTTTAATTATGGTTCTCTGATATTTTCTCACTACCATCTGCTTT
TTTTCTTCCACAGCTGTTATCATATAACTGTGGAAAGTTCTTTACTCTGT
GAGGACATTCTAGAGGACTGCCTATATTTTAAGTATTCCACAT

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGAAGGGCAAGTGGGCACA
AAGCCCTATCCCTGAGAAGGGCAAGTGGGCACAAAGCCCCACCCCTGAGA
AGGGCAAGTGGGCACAAAGCCCCATCCCTGAGAAGGGCAAGTGGGCACAA
AGCCCCACCCCTGAGAAGGGCAAGTGGGCACAAAGCCCCATCCCTGAGAA
GGGCAAGTGGGCACAAAGCCCCACCTCTGAGAAGGGCAAGTGGGCACAAA
GCCTCACCCCTGAGAAGGGCAAGTGGGAACAAAACCCCACCCCTGAGAAG
GGCAAGTGGGCACAGAGTTTTTTTTCCTGAGAAGGGCAAGTGGGCACAGA
GCCCCACCCCTGAGAAGGGCAAGCGCCCCCCCAGTCACACACCTGAGAAG
GGCAAGTGGGCACAGAGCCCCACCCCTGAGAAGCTGTTTGCAATTGATAG
CTGCTGAGAGAGGAAAAACAAGGCTGCTTTCCAATAGCGTGAATAACAGT
GTTGGCTGTTTTAAAGTAGATGGTCCTTACCATTTTGTACGTACTTACTT
AGCTAAACCTTGTCTCCTTAAATGTTAGAGCCTAAGTCAGTATATGCATT
TCATTGACTGTAAACCTAGCAAAAGTTTTGAAAGTTACTGCAATTCAACA
ACTCTAATTGTTAAAGTTGTAACTCCTAAAATAATTTTAA

Query= MSMg01no321_p24.b1 MSMg01no321_p24.b1 CHROMAT_FILE:
MSMg01no321_p24.b1 PHD_FILE: MSMg01no321_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:52 2005
         (672 letters)



>mm_chr19_52063330_52064401
          Length = 1072

 Score = 1108 bits (573), Expect = 0.0
 Identities = 647/677 (95%), Gaps = 10/677 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaatcattcattcattcacatttaaaaaataagacaaaataaaagacaagataaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaatcattcattcattcacatttaaaaaataagacaaaataaaagacaagataaaaaca 260

                                                                       
Query: 61  aaaactatcacatcatagttgaacaagataaaccaacaaaaggaataaggtctaagcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aaaactatcacatcatagttgaacaagataaaccaacaaaaggaataaggtctaaacaaa 320

                                                                       
Query: 121 gacaaaacaatcaaagacctactcattccacattcaggtgtgcctactggcttgctcatc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 321 gacaaaacaatcaaagacctactcattccacactcaggtgtgcctactggcttgctcgtc 380

                                                                       
Query: 181 cagctaaacttcagctaccattctatatctcccaggaccacttaccccggggcagtagtg 240
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 381 cagctaaacttcagctaccattctatatcttccaggaccacttacccaggggcagtagtg 440

                                                                       
Query: 241 cccatagtaggcttggctctcccacatcaatcctaaatcaagaaaatgacccatatacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccatagtaggcttggctctcccacatcaatcctaaatcaagaaaatgacccatatacct 500

                                                                       
Query: 301 gcttaaaggccaataaaataaagacattttctcggttcaggttttctcctaca-----cc 355
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| |     | 
Sbjct: 501 gcttaaaggccaataaaataaagacattttctcagttcaggttttctcctagatgtgtct 560

                                                                       
Query: 356 cccccaggtttgtgacaactgaccaatgccaaccagcacatcatgtactttactacttca 415
                | ||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 561 -----aagtttgtgacaactgaccaacgacaaccagcacatcatgtactttactacttca 615

                                                                       
Query: 416 gatatgtaaaacctcccaaagtacatgacccaggaggtgatgtgcccctcatgtcagaga 475
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 616 gatatgtaaaccctcccaaagtacatgacccaggaggtgatgtgcccctcatgtcacaga 675

                                                                       
Query: 476 gggaaacctaaggttcacagagcgtaagtattggggcagacggaagtggtacccttaata 535
           ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 676 ggggaacctaaggttcacagagcgtaagtattgggacagatggaagtggtacccttaata 735

                                                                       
Query: 536 ttttaattatggttctctgatattttctcactaccatctgctttttttcttccacagctg 595
           |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 736 ttttaattatggttttctgatattttctcactatcatctgctttttttcttccacagctg 795

                                                                       
Query: 596 ttatcatataactgtggaaagttctttactctgtgaggacattctagaggactgcctata 655
           ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 796 ttatcatataactgtggaaagatctttactctgtgaggtcattctagaggactgcctata 855

                            
Query: 656 ttttaagtattccacat 672
           |||||||||||||||||
Sbjct: 856 ttttaagtattccacat 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)