Query= MSMg01no322_h08.b1 MSMg01no322_h08.b1 CHROMAT_FILE:
MSMg01no322_h08.b1 PHD_FILE: MSMg01no322_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:25 2005
(291 letters)
>mm_chr19_36230656_36231346
Length = 691
Score = 514 bits (266), Expect = e-150
Identities = 282/292 (96%), Gaps = 9/292 (3%)
Strand = Plus / Minus
Query: 1 tagtgcagaagaaagaactaaaacacacatggggaagaggaagtgaaatatccctagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagtgcagaagaaagaactaaaacacacatggggaagaggaagtgaaatatccctagttg 321
Query: 61 gttagagaaaacatgatcctatactttaaaaatgactcttagaatggacaaccagttata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttagagaaaacatgatcctatactttaaaaatgactcttagaatggacaaccagttata 261
Query: 121 tcaaattattgcgatgtatagcgaagatatcagaaaacaatcacattcacaatatcttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcaaattattgcgatgtatagcgaagatatcagaaaacaatcacattcacaatatcttta 201
Query: 181 taacaaacaaacaaacaaacaaacaaaaaactccctaggtgtgttagagagatg-----g 235
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 200 ----aaacaaacaaacaaacaaacaaaaaactccctaggtgtattagagagatgagatgg 145
Query: 236 ctcagtggctaagagtgtgcacttctcttgcagaggacccaagtttgagtcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ctcagtggctaagagtgtgcacttctcttgcagaggacccaagtttgagtcc 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no322_h08.g1 MSMg01no322_h08.g1 CHROMAT_FILE:
MSMg01no322_h08.g1 PHD_FILE: MSMg01no322_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:26 2005
(292 letters)
>mm_chr19_36075938_36076629
Length = 692
Score = 530 bits (274), Expect = e-155
Identities = 290/300 (96%), Gaps = 8/300 (2%)
Strand = Plus / Plus
Query: 1 ccacttacctgggcctggagcaacaatggcaagaattagctccatctagcgcatagtgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 201 ccacttacctgggcctggagcaacaatggcaagaattagctccatctagtggatagtgcc 260
Query: 61 tgacacaggcaagaagaccctgtggagggggtgacagtacagtcaaggccacagagttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacacaggcaagaagaccctgtggagggggtgacagtacagtcaaggccacagagttca 320
Query: 121 ggataacttgggttaaggggctttgccaccactctacagacttctggcagttgctttcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggataacttgggttaaggggctttgccaccactctacagacttctggcagttgctttcac 380
Query: 181 agcctctgcaggcttactcagaggtgcattctttaatatacataatatatatacacacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctctgcaggcttactcagaggtgcattctttaatatacataatatatatacacacac 440
Query: 241 acatgcatatatatatatatatatatat--------atatatatatatatactgcatata 292
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 acatgcatatatatatatatatatatatgtatatatatatatatatatatactgcatata 500
Score = 64.5 bits (33), Expect = 7e-15
Identities = 36/37 (97%), Gaps = 1/37 (2%)
Strand = Plus / Minus
Query: 253 atatatatatatatatatatatatatatatactgcat 289
||||||||||||||||||||||||||||||| |||||
Sbjct: 600 atatatatatatatatatatatatatatata-tgcat 565
Score = 64.5 bits (33), Expect = 7e-15
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 246 catatatatatatatatatatatatatatatat 278
|||||||||||||||||||||||||||||||||
Sbjct: 601 catatatatatatatatatatatatatatatat 569
Score = 62.6 bits (32), Expect = 3e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 251 atatatatatatatatatatatatatatatat 282
||||||||||||||||||||||||||||||||
Sbjct: 600 atatatatatatatatatatatatatatatat 569
Score = 62.6 bits (32), Expect = 3e-14
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 249 atatatatatatatatatatatatatatatat 280
||||||||||||||||||||||||||||||||
Sbjct: 600 atatatatatatatatatatatatatatatat 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 5
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
