Query= MSMg01no323_d14.b1 MSMg01no323_d14.b1 CHROMAT_FILE:
MSMg01no323_d14.b1 PHD_FILE: MSMg01no323_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:32 2005
(675 letters)
>mm_chr19_54297069_54298139
Length = 1071
Score = 1193 bits (617), Expect = 0.0
Identities = 659/675 (97%), Gaps = 4/675 (0%)
Strand = Plus / Plus
Query: 1 agtgaccctagacagatctcagggactctctgttctattcatatccacaaagatcttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgaccctagacagatctcagggactctctgttctattcatatccacaaagatcttcag 260
Query: 61 aatctcactgtgagcggataacttcaaggtcatttggcatctttgtaaatgtattgaata 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctcactgtgggcggataacttcaaggtcatttggcatctttgtaaatgtattgaata 320
Query: 121 ctagtctccagccaacacagtctacaacttacatgaggtagtgcctataaggtcacacct 180
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 321 ctagtctccagccaacacagtctacaatttacatgaggtagtacctataaggtcacacct 380
Query: 181 ataaggtcagagccattagtggcattaggtaatggaatgggggcctcaccctgggctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaggtcagagccattagtggcattaggtaatggaatgggggcctcaccctgggctctc 440
Query: 241 tacttagtctgacctgggcattgtattttaagtaaagcctcacagaggccccccatctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttagtctgacctgggcattgtattttaagtaaagcctcacagaggccccccatctga 500
Query: 301 caagagcctcaggctgtctttgaggaggttgtggacatcttccagggctctccatgtcct 360
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagagcctcaggctgtcagtgaggaggttgtggacatcttccagggctctccatgtcct 560
Query: 361 catgcttgatcattaatttattctgtcctgcacctcacatatggagagccaggcactctt 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 catgcttgatcattaatttattctgtcctgcatctcacatatggagagccaggcactctt 620
Query: 421 gctggcatgagggacatggtattgaatgaggcagggtaacaaactctgttccaagtggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctggcatgagggacatggtattgaatgaggcagggtaacaaactctgttccaagtggat 680
Query: 481 cacatgctcatgtggaacatggtctcttaaatgaggagataaggcaaagacatccccact 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacatgctcatgtggaacatggtctcttaaatgaggagataaggcaaagacatccccac- 739
Query: 541 ttactttgtttactttcccctcaacaaaggccaggtaccacatcccagcggtagctacca 600
|| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 740 ---ctgtgtttactttccccttaacaaaggccaggcaccacatcccagcggtagctacca 796
Query: 601 gcggtagactctatgatgatggtgatgttgtccttttagtgatttgttccttcatgcgtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 797 gcggtagactctatgatgatggtgatgttgtccttttagtgatttgttccttcatgcctg 856
Query: 661 ctcctttgtgttgta 675
|||||| |||||||
Sbjct: 857 ctccttcatgttgta 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1071
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1061
Effective search space: 705565
Effective search space used: 705565
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_d14.g1 MSMg01no323_d14.g1 CHROMAT_FILE:
MSMg01no323_d14.g1 PHD_FILE: MSMg01no323_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:32 2005
(648 letters)
>mm_chr19_54477368_54478415
Length = 1048
Score = 936 bits (484), Expect = 0.0
Identities = 499/504 (99%)
Strand = Plus / Minus
Query: 145 tcgtctgagtggagacatgaaactgagcgatgcacctgcttctctctgctcccgactgtg 204
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 tcgtctgagtggagacatgaagctgagcgatgcacctgcttctctctgctcccgactgtg 989
Query: 205 cataccatgtgactggttgttttaggttcctgcagctttgactcccctgttattatggat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 cataccatgtgactggttgttttaggttcctgcagctttgactcccctgttattatggat 929
Query: 265 tgtaagttgtaattatgacctaaaataaaaacgtccactactattgctttgtgtcagagt 324
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 tgtaagctggaattatgacctaaaataaaaacgtccactactattgctttgtgtcagagt 869
Query: 325 attttattatagcaaagaaatggagtgaaaatagaggggctggattagaagagggtgtat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 868 attttattatagcaaagaaatggagtgaaaatagaggggctggattagaagagcgtgtat 809
Query: 385 gtgtgtgtaaaaagtcacaaagctgatacaagtctgggagccatagacggggttgaaaag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gtgtgtgtaaaaagtcacaaagctgatacaagtctgggagccatagacggggttgaaaag 749
Query: 445 ataccaagatgtgcttagtgttcccaatcccacacttgtgtggatgatgctgatactcaa 504
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 748 ataccaagatgtgcttagtgttcccgatcccacacttgtgtggatgatgctgatactcaa 689
Query: 505 aagtatcctttgacacaggaggatctgggtatgggacaaaggaaggcagttaattaggct 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aagtatcctttgacacaggaggatctgggtatgggacaaaggaaggcagttaattaggct 629
Query: 565 ttaaagccatggaaataacaatggaaagaaatagagctgggcccagtgatgatgttattc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttaaagccatggaaataacaatggaaagaaatagagctgggcccagtgatgatgttattc 569
Query: 625 tctagttcagtgataaggagaact 648
||||||||||||||||||||||||
Sbjct: 568 tctagttcagtgataaggagaact 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
