BAC Information

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BAC

Clone NameMSMg01-323E10
Chromosome19 (Build37)
Map Location 19,922,393 - 19,923,073
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm6, Rorb
Downstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323E10.T7 (MSMg01no323_e10.b1)MSMg01-323E10.TJ (MSMg01no323_e10.g1)
ACCAG441743AG441744
length1,1581,263
length of high quality
(start - end)		647 (134 - 780)683 (94 - 776)
definitionCHROMAT_FILE: MSMg01no323_e10.b1 PHD_FILE: MSMg01no323_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:38 2005CHROMAT_FILE: MSMg01no323_e10.g1 PHD_FILE: MSMg01no323_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAACAANNNNNNNCCTCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGGCCCATACCTAAACCTTAAAAAGCCAATCTACAGC
AAACCAGAAGCCAACATCCCTGTAAATGGACCGAAGCTGGAAGCAATCCC
ACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCA
ACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATC
AAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGA
TGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCC
TAAACCTGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATAAACTCA
AACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGA
AATTAGGGAAACAACACCCTTGTCAATAGTCACAAATAATATAAAATATC
TTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTC
AAATCTCTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCT
CCCAGGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATTTTGC
CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAA
TTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAACAA
AAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGCG
GAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAA
ACTGCATGTTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAAAAT
TGAAGACCCAGAAATGGACCCCACCACCCTATGGTCACTTGATCTTCGAC
AAGGGAACTAAAACCATCCCGGGGAAGAAAAGACAGCCATTTTCAACCAA
TGGGGGCTGGCCCAACTGGGTGGTTATTCTGGTAAAAAAAAAGCGAAAAC
CGAACCCTAACTTAACTCCCTTGGGACCAAAGGGAAAAACCTTAAGGGGA
TTCCGGGGAAATTTTTCCTTTAAACCCCCCGAAAAACCTGGAAATCCTTA
TAAGGGGA

NCAATCTNNNNNNTTTAGATGGNATGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTGAACTCTTGGCTAAGA
TAGAAAATTTCAAATGGCAGTCTTGATTTATGACACCAGATTTTTTTTTT
CAAAAATGATATGTAACATATTTATCACATGTGATTTATGATAACACTGC
ATAATTTCAATCATATGACATTGTAAAATATATGTTAAATTGTAATTTAT
TTTATTTAGGTAAATGCATTATTAAATTATATTCTTATTTGTCATACAAT
AATAAGACATTAAAATGCTAGACATGAAAATTAGAAATATTTGTAGTACT
TGTTCAGAATAAACCTGTGAGGATGGTCTGGTTTTTGTTTTCTTATTTAC
CCAACATTTTATCGTGTTTATTCAACAGGAAAAGATTAGCAAAAATATCT
ATCCTGCTGAGTAAGGGACAAAGTGAAAATCAAGGTCATTTTTCAGTCTG
TGTTAACTAGCATGTCAATTATGCCTCGGCTTTGACACAAAGCAGAACTG
GAGCGAGTACACAGCCGGGGATCATGAGGTTCCACTCAGCAGCAGCCTTC
AGGCTGCTGTCTGCATATAACCTCTATTTTTAAAACTATGTTTTGTAGTC
AATATGACCCAAGCAGAAATCTTAACTGAAGAATAAAATAGTCAAATCCA
AATCACCCTCAGTTAGAGTTTACTATAATAATAATTTGAGGTGATCTTAA
AGATACATTTTAGTTTTCCTTAAATAATATTTATTCACTAAAAAATTTAC
CATGGTTATCATTCAATCTATGATCTTAAAGTTAAAATAACACTATGTAA
AATAAAATAATAACATACCATGTAAACAGTTTACCAGTGACTACAAGTGG
TGTTTTTAGCAAAATCTCAATTGCTTCATTTTACCCCTGAAAACTCAGGA
CCCAAATGCTGGGGTGAAAACCTACCCGGGATAGGGATTCCAATGAAACC
CCCCTATTTAAAAATCCAACCTAAGTCACCAATGAAAAAAAAGAAAACGA
AAATATTTGTGGCTCGGGCGGGGGTTTACCCCCCCCAAATGGATAAGGTT
AATCTTCCCCCTGGAGGCCCGCCCTTTTTTTTATTTTAATACGGGGGGCA
CACCCCTTTTAAATACCAAAAGGGCCCCACATTAATTTCTCCGAAGGTGA
AACATAATCTTTTCTCCCAACCACCCCACCCATTATTCCCCTCTTACCCC
CCGAAAAACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_e10.g1 MSMg01no323_e10.g1 CHROMAT_FILE:
MSMg01no323_e10.g1 PHD_FILE: MSMg01no323_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:38 2005
         (683 letters)



>mm_chr19_19922193_19923273
          Length = 1081

 Score = 1232 bits (637), Expect = 0.0
 Identities = 671/683 (98%), Gaps = 2/683 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctaagatagaaaatttcaaatggcagtcttgatttatgacaccagattttttttttcaa 60
           ||||||||||||||||||||||||||||  |||||||||| |  |||||||||||  |||
Sbjct: 201 gctaagatagaaaatttcaaatggcagtaatgatttatgaaaaaagatttttttt--caa 258

                                                                       
Query: 61  aaatgatatgtaacatatttatcacatgtgatttatgataacactgcataatttcaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaatgatatgtaacatatttatcacatgtgatttatgataacactgcataatttcaatca 318

                                                                       
Query: 121 tatgacattgtaaaatatatgttaaattgtaatttattttatttaggtaaatgcattatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tatgacattgtaaaatatatgttaaattgtaatttattttatttaggtaaatgcattatt 378

                                                                       
Query: 181 aaattatattcttatttgtcatacaataataagacattaaaatgctagacatgaaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaattatattcttatttgtcatacaataataagacattaaaatgctagacatgaaaatta 438

                                                                       
Query: 241 gaaatatttgtagtacttgttcagaataaacctgtgaggatggtctggtttttgttttct 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 439 gaaatatttgtagtacttgttcagaataaacctgtgaggatgctctggtttttgttttct 498

                                                                       
Query: 301 tatttacccaacattttatcgtgtttattcaacaggaaaagattagcaaaaatatctatc 360
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 499 tatttatccaacattttatcgtgtttattcaacaggaaaaggttagcaaaaatatctatc 558

                                                                       
Query: 361 ctgctgagtaagggacaaagtgaaaatcaaggtcatttttcagtctgtgttaactagcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctgctgagtaagggacaaagtgaaaatcaaggtcatttttcagtctgtgttaactagcat 618

                                                                       
Query: 421 gtcaattatgcctcggctttgacacaaagcagaactggagcgagtacacagccggggatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtcaattatgcctcggctttgacacaaagcagaactggagcgagtacacagccggggatc 678

                                                                       
Query: 481 atgaggttccactcagcagcagccttcaggctgctgtctgcatataacctctatttttaa 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 679 atgaggttccactcagcagcagcctttaggctgctgtctgcatataacctctatttttaa 738

                                                                       
Query: 541 aactatgttttgtagtcaatatgacccaagcagaaatcttaactgaagaataaaatagtc 600
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 739 aactatgttttgtagtcaatatgacccaaggagaaatcttaactgaagaataaaatagtc 798

                                                                       
Query: 601 aaatccaaatcaccctcagttagagtttactataataataatttgaggtgatcttaaaga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aaatccaaatcaccctcagttagagtttactataataataatttgaggtgatcttaaaga 858

                                  
Query: 661 tacattttagttttccttaaata 683
           |||||||||||||||||||||||
Sbjct: 859 tacattttagttttccttaaata 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1081
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1071
Effective search space:   720783
Effective search space used:   720783
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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