Query= MSMg01no323_n03.b1 MSMg01no323_n03.b1 CHROMAT_FILE:
MSMg01no323_n03.b1 PHD_FILE: MSMg01no323_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:48 2005
(662 letters)
>mm_chr19_42627586_42628648
Length = 1063
Score = 1170 bits (605), Expect = 0.0
Identities = 649/667 (97%), Gaps = 9/667 (1%)
Strand = Plus / Minus
Query: 1 aaaaacctggcatacgagaaccataggccctgaacatttataaccagatcttcactggac 60
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 863 aaaaacctggcatacgagaaccataggcaatgaacatttataaacagatcttcactggac 804
Query: 61 aaaactactgtaggtaagaaaatgatgaatggagaaaagagggatgctttaatatacttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaaactactgtaggtaagaaaatgatgaatggagaaaagagggatgctttaatatacttg 744
Query: 121 acagtacaataaagcaagcagcacataaattacttgatgctgggaagatagtagccagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acagtacaataaagcaagcagcacataaattacttgatgctgggaagatagtagccagtg 684
Query: 181 ctatacaatgctgagcaacctcctttggtttgagaataatctaggacggctctgaccacc 240
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctacataatgctgagcaacctcctttggtttgagaataatctaggacggctctgaccacc 624
Query: 241 gtgagtacacaaagcacctgaacatcggaagtgtgggcagtccgacctgagaggtaaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtgagtacacaaagcacctgaacatcggaagtgtgggcagtccgacctgagaggtaaccc 564
Query: 301 tgtagggtttccaaggcttg----tttattgcatgtgtgcacacactcaattaaaatgtc 356
|||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct: 563 tgtagggtttccaaggcttgggac---a-tgcatgtgtgcacacacacaattaaaatgtc 508
Query: 357 tcattatttttatgatgactcaatagagacgatgactgcttcggatatactagtttatat 416
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 507 tcattatttttatgatgactcaatagagatgatgactgcttcggatatactagcttatat 448
Query: 417 aaaatattaatttcatgtttattcttatactttttaaaggagctgttgaacttaaaaatc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaaatattaatttcatgtttattcttatactttttaaaggagctgttgaacttaaaaatc 388
Query: 477 atttctgtggttcacacccctgccccatgtcatgcttctaatggaacagcactgttccaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atttctgtggttcacacccctgccccatgtcatgcttctaatggaacagcactgttccaa 328
Query: 537 gatgcttccacagtgctaaagtcatgagccagcttttcctctttgtactgtctacttcag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gatgcttccacagtgctaaagtcatgagccagcttttcctctttgtactgtctacttcag 268
Query: 597 caatatggaaacac-accaacctaatctgtacattcacaattatttttaaagtgctaaat 655
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caatatggaaacacaagcaacctaatctgtacattcacaattatttttaaagtgctaaat 208
Query: 656 acaaaaa 662
|||||||
Sbjct: 207 acaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1063
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1053
Effective search space: 686556
Effective search space used: 686556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_n03.g1 MSMg01no323_n03.g1 CHROMAT_FILE:
MSMg01no323_n03.g1 PHD_FILE: MSMg01no323_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:48 2005
(671 letters)
>mm_chr19_42446478_42447548
Length = 1071
Score = 1212 bits (627), Expect = 0.0
Identities = 660/675 (97%), Gaps = 8/675 (1%)
Strand = Plus / Plus
Query: 1 aagcgggtcaggcatctgtaagaaaaggcaagagatggtgggcagacttgggacagtaag 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagcaggtcaggcatctgtaagaaaaggcaagagatggtgggcagacttgggacagtaag 260
Query: 61 gtcaatttaactacgttctgggtcccttccagacagaagaaccatataaggagaggcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaatttaactacgttctgggtcccttccagacagaagaaccatataaggagaggcaca 320
Query: 121 tctttgctacccatgccttgccaggaggattcatggttttctaatttcaaatatctaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgctacccatgccttgccaggaggattcatggttttctaatttcaaatatctaaga 380
Query: 181 tctgtgcaaggggaaagagctggcactttggggaaaatgaaggaagctctgccaacaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtgcaaggggaaagagctggcactttggggaaaatgaaggaagctctgccaacaggt 440
Query: 241 aggaaatttacagcgtttgtaatctaaagaagaga----attttggtttaaaatataaat 296
|||||||||||||||||||||||| |||||||||| | ||||||||||||||||
Sbjct: 441 aggaaatttacagcgtttgtaatccaaagaagagaaaaca----ggtttaaaatataaat 496
Query: 297 gacgctcaaaagggtttaaattcaccgatgacagtcagaatggattatgaatggaaaacg 356
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gacgttcaaaagggtttaaattcaccgatgacagtcagaatggattatgaatggaaaacg 556
Query: 357 ctgctggctggtgggaggatgcttgccaggatattggtatctgaggagttaaccctgctg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctgctggctggtgggaggatgcttgccaggatattggtatctgaggagttaaccctgctg 616
Query: 417 tctccgtaagaatcttgggcatgcacaggcaggaggacagttctttatgtgcactgctgt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctccgtaagaatcttgggcatgcacaggcaggaggacagttctttatgtgcactgctgt 676
Query: 477 gggggcttagagtcttgtcaggaaaaagaggggtcagctgagaggctaagagaaggaaat 536
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 677 gggggcttagaatcttgtcaggaaaaaaaggggtcagctgagaggctaagagaaggaaat 736
Query: 537 aagaacagacaatcctgagcatgcgtgaggtcaggtgccccagggaggcaacgctactcc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aagaacagacaatcctgagcatgcgtgaggtcaggtgccccagggaggcaacgctactcc 796
Query: 597 atcttaggtggtgttagaaattggggtactccccacaagacaggataccccctcacttct 656
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 797 atcttaggtggtgttagaaattggggtactcctcacaagacaggataccccctcactttt 856
Query: 657 tctctccaagaaagt 671
|||||||||||||||
Sbjct: 857 tctctccaagaaagt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
