BAC Information

Click to search

BAC

Clone NameMSMg01-324J10
Chromosome19 (Build37)
Map Location 11,012,418 - 11,012,772
singlet/doubletsinglet
Overlap geneGpr44
Upstream geneFth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1
Downstream geneCcdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324J10.T7 (MSMg01no324_j10.b1)MSMg01-324J10.TJ (MSMg01no324_j10.g1)
ACCAG442700AG442701
length749757
length of high quality
(start - end)
363 (25 - 387)349 (77 - 425)
definitionCHROMAT_FILE: MSMg01no324_j10.b1 PHD_FILE: MSMg01no324_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:56 2005CHROMAT_FILE: MSMg01no324_j10.g1 PHD_FILE: MSMg01no324_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTATAGTTCGAGAATACCGCGGAATTCTCATATTGGTTTCATGAAC
TGTAGAGTGAGGGCTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTAGA
GTTGCCTCTGCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTG
GAGGCATTGCAGAAATTACTGCCACTATCAAGGACTTGAAAGATGCAGGG
GTGGTGGTTCCCACCACATCTCCATTTAACTCTCCTATCTGGCCAGTGCA
GAAAACAGATGGATCATGGAGAATGACAGTTGATTATCGAAAACTAAATC
AGGTGTTATCTCCAATTGCAGCTGCTGTACCAGATGTAGTTTCGTTACTT
GAGCACATTAACACATCTCCTGGCACCTGTTATGCGGCTATTGATCTGCC
AAATGCCTTCTTCTCAGTACCTGTCTTTAATGACCACCAGAAGCAATTTG
CTTCCAGTTGGCTAGGCCAACTGTATACCTTCACAGTTTTGCCTCAAGGA
TATTATTAACTCTCCTGCCCTGCGTCTTAATTTATTTAGAAGGTATCTTG
ATCATTTGGATCTTCTCCACTATATCCCTTTGGTGCTCTTAAATTGATTG
TTATTATGCTGATTGGTATCTTTTGTATTCGGATCATCCACCCTTTTTTT
GACTTTCTTGGTTACCACTACATGTTCCATCTTTAACCATGTTTCCTAAT
ACCTCAACCCACATAACTTCCGCGATACCAACTAACCTCACAACGAATG
NAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGCCCTATTCATAGAGCTCAAAGATGTCAGAT
GTGCCTGCTCCCTTTGACCTAGCTCCAATAGGTATTCTGTCAGGGATCTT
CTAGGTTGGGGTCCCAGAGCTCCACCCTAGGAAGATCAGTGGCTTCTGGA
AGGGTGTAGATTTTTCCATTCTGGCCAATAGAATTTGAAAGAGGAGTTCT
GTTAGAAAGAGGGGTTCTGAGGTCTCTGGCAAGCTCCTATTTCCTGCTCT
TCTCCATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTG
TCTCTCTCTCTGTCTCTCTCTCTCTGTCTCTCTCTCTCTGTCTCTCTCTC
TCTCTTTCTTTCTTTTTTTGGTGCTCCCGAGTCAGGGTTTCTTTGTGTAG
CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCA
GAAATCCGCTTGCCTCTGTCTCCTACATGCTGGGATTATAGGCATGCGCC
ACCACTGCTCAGTTCCTTCTCTTCTTCTATCATCCCACTTTCAAAGCTAG
ATAGACAGTAGCCTGAGGACTGAACTATTCCCTCTTCCACATGTCTTGTG
TTGCGTGTCTTCAACTTGCACTTTAAACTCTTGTGTCTCAGTTTTTTCCT
CTGTAAAACGAATGTGTATGGATAAGTCTTGGCACTTTTCCTTACATAGT
CTCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_j10.g1 MSMg01no324_j10.g1 CHROMAT_FILE:
MSMg01no324_j10.g1 PHD_FILE: MSMg01no324_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:56 2005
         (349 letters)



>mm_chr19_11012218_11012966
          Length = 749

 Score =  617 bits (319), Expect = 0.0
 Identities = 343/355 (96%), Gaps = 8/355 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatagagctcaaagatgtcagatgtgcctgctccctttgacctagctccaataggtatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatagagctcaaagatgtcagatgtgcctgctccctttgacctagctccaataggtatt 260

                                                                       
Query: 61  ctgtcagggatcttctaggttggggtcccagagctccaccctaggaagatcagtggcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcagggatcttctaggttggggtcccagagctccaccctaggaagatcagtggcttc 320

                                                                       
Query: 121 tggaagggtgtagatttttccattctggccaatagaatttgaaagaggagttctgttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaagggtgtagatttttccattctggccaatagaatttgaaagaggagttctgttaga 380

                                                                       
Query: 181 aagaggggttctgaggtctctggcaagctcctatttcctgctcttctccatttctctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaggggttctgaggtctctggcaagctcctatttcctgctcttctccatttctctctc 440

                                                                       
Query: 241 tctctctctctctctctctctctctttctctctgtctctctctctgtctctctctctctg 300
           ||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||
Sbjct: 441 tctctctctctctctctctctctctctctctctctctctctctctctctctttctctctg 500

                                                                  
Query: 301 tctctctctct----ctgtctctctctctctct----ttctttctttttttggtg 347
           |||||||||||    ||||||||||||||||||    ||||||||||||||||||
Sbjct: 501 tctctctctctgtctctgtctctctctctctctctctttctttctttttttggtg 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 117
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)