BAC Information

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BAC

Clone NameMSMg01-324P08
Chromosome19 (Build37)
Map Location 44,089,534 - 44,089,787
singlet/doubletsinglet
Overlap geneCyp2c44
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1
Downstream geneErlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324P08.T7 (MSMg01no324_p08.b1)MSMg01-324P08.TJ (MSMg01no324_p08.g1)
ACCAG442967AG442968
length795727
length of high quality
(start - end)
254 (45 - 298)244 (82 - 325)
definitionCHROMAT_FILE: MSMg01no324_p08.b1 PHD_FILE: MSMg01no324_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:24 2005CHROMAT_FILE: MSMg01no324_p08.g1 PHD_FILE: MSMg01no324_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTTATGCATATGAATCGGCGGAATTCTCTATGTTTTCCAGGTATGT
ACTTCATGATCGTCGGCCATAGGTTGTACATCTACAAATGAAAGTGAGCA
AACACAGGAAGTATGGGTAATGCCCTTGTGAGGAGTCACCGGTGTGGCTG
GCAGGGAGGGGAGGGTAAGTGACATGCAAAGAGGAGTGTCCCTCCCATCT
ATGGCTTGTCCTACCATTGCTCAACCCCAGAGTCAGGGAGTGGAGATGTA
CTGAGTGGCTGTCAATGGAAGTGACTGGAAAAGCCCTTCTTGACTCCCTT
TCTCCCTCCCTCACTCCTTCCCTCCTCCTTTTTTTTTCTCTGCTTTCCTC
CTTTTTCCTTTTTTTTTTCTTTTTCTTCTTTTCTCCTTTTTATCTTCTTA
TTCTTATATTCGTGTTATTTTCATCCTTTATCCCTTTTCCTTTTATTTTC
TCTCCTCACCTCTTTCTACCTTACTTTTTCCTTATATCATCTCCTTATCC
ATTTTCTCTTCTTTCTCCCCACCGTAACATTAACTTTTTTCTCCTTTTAC
TCTCCCTATTTTTCTATTCTCTCTTCTTTTTTCTTTTCCTCTCCTCTTCT
CTCCTTCATGTTACTCTTTCACTTTTATATTTTTCTCTCTCTCTCCTCCG
TTTTCTTTACTTACTTCCTTCTTTCCTCCATTCCTTTTTATTTCTCGTAT
TCCTTACAGTCTTTCTCTTCTCCTTTTCCCCCATATATCCCTTTTTCCTT
TTACTCTCTTTCTATTATCTTCTTCTTACACTCTACTATTCCCTT
AAAAAATCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTCCCGCAAAATTATTTTTTGGGAAGAGGT
GACATACAACACGTCACATTGTACATGTAGAGATCAAAGGACAGAAGGTG
GGGTGATAGTTCTCCCCTCCTACCATGGTGGGCCCAGGAATTGAACTCAG
GTTCAAGCACCTTTACCTTCTGAGCCGTGTCTCCAGCCCTTAGAATATCT
TAAAAGGAAGCTCTTTCTTAGTCATAGGGAGTTTGGGAAATAACTCTCTG
GATTGTTATCTCCTCTGCGTGTATGTTTAATGTTTATTTAAATTACAAAT
GATGCCCCCATTTTCTTTCCTTTTGTTCTAAGGTATAATCTCCTAACTCC
TCTGTTGAGGCTAATTTCCTAAACATCTAACTAGAAACTTCAGATTTTTC
TCTCTGATCACAAGCCATGATTTTTTATTCAAGTTGTGTATTATTGATCA
TTAAGTTACTTGCACATACATAAAGGTGTTTGTTTTTCTTTTTTGTAGGG
AACAGCGTGCCATTGATCTCTATAAGCAGCTAAAGCACAGACCTCCTGGT
AAGACACTTCAGTCTCAGTATTGAAAGGTGGTTTAGGAAACACCCTAACT
GAACAAAGGGGGTAAATTTTAATGTTTTTTAACCTCTTAGCATGATCCTG
TTTTGCTATTCTTTTTGCAACATTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_p08.b1 MSMg01no324_p08.b1 CHROMAT_FILE:
MSMg01no324_p08.b1 PHD_FILE: MSMg01no324_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:24 2005
         (254 letters)



>mm_chr19_44089334_44089987
          Length = 654

 Score =  484 bits (250), Expect = e-141
 Identities = 253/254 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatgtacttcatgatcgtcggccataggttgtacatctacaaatgaaagtgagcaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatgtacttcatgatcgtcggccataggttgtacatctacaaatgaaagtgagcaaaca 260

                                                                       
Query: 61  caggaagtatgggtaatgcccttgtgaggagtcaccggtgtggctggcagggaggggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaagtatgggtaatgcccttgtgaggagtcaccggtgtggctggcagggaggggagg 320

                                                                       
Query: 121 gtaagtgacatgcaaagaggagtgtccctcccatctatggcttgtcctaccattgctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagtgacatgcaaagaggagtgtccctcccatctatggcttgtcctaccattgctcaa 380

                                                                       
Query: 181 ccccagagtcagggagtggagatgtactgagtggctgtcaatggaagtgactggaaaagc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ccccagagtcagggagtggagatgtactgagtggctgtcaatggaagtgactgggaaagc 440

                         
Query: 241 ccttcttgactccc 254
           ||||||||||||||
Sbjct: 441 ccttcttgactccc 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)