BAC Information

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BAC

Clone NameMSMg01-325A03
Chromosome19 (Build37)
Map Location 7,747,403 - 7,747,751
singlet/doubletsinglet
Overlap geneSlc22a19
Upstream geneRps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217
Downstream geneLOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325A03.T7 (MSMg01no325_a03.b1)MSMg01-325A03.TJ (MSMg01no325_a03.g1)
ACCAG443003AG443004
length730735
length of high quality
(start - end)
349 (74 - 422)346 (69 - 414)
definitionCHROMAT_FILE: MSMg01no325_a03.b1 PHD_FILE: MSMg01no325_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:28 2005CHROMAT_FILE: MSMg01no325_a03.g1 PHD_FILE: MSMg01no325_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGG
AATTCCAACCGGTTCTCTCGATCAGGAGAAAGATGAAAAAATATATATCA
TTCAGCATATCGTGGTCCAGAATTATACCTATATGTTAGCAAGATTTTTC
CATATAAGTCACTGTATAAATAATGAGTTAAATTAAAATTATACTAGTTT
GTCATGTATAAAATAACTATAATAAAGAAATTTGAATAAAATCACAATAT
ATTGAAGAAACATTAACTCAAAAATTTTATTGTCAGTGATACTGGTCAAG
TTTCAGTATACAGCACATGTTTGTGATGTATGGCAGCTCAATGGAATTGA
AATCTTCCAAGTCTTAGAGCAGGGAGCAGGGTACAGGGAGACTTCATGAG
ACTCAGAAGGTAAACAAAACTTCGCACACCCTCTGGAAGACCTTTATCTA
GCTTTTTTAAAGAAGTAAATAGTATTGTGGGAGAACACTGAGCAGCCAAG
CTTGAAAGCAGATATTTAGCTACTGAACTGCCCAGAAACTGGTCAGAAAG
CCACCACGGTGAACACTTGCATAAAGTATTGAGGGGACTTTCAGTGATGT
AGCTGCTCTTTTTGAGTCATCCCTGTCCCCTGTAAAAANACAAAACTTTT
ACTCACATTCCTGTTGGTAACCCCCATAAATCACCAAGGCGATCTTTGTT
GCAACTACTGCGATCTTCATGCGTTATCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTTCAGAAATTCACAGAGGTCTGTCTGCATCCTGAGTGCTGG
GATTAAAGGCATGTGCCGCCGCCACCTGGCTATGAGTAACCTTTTAAACT
GTGTTTCAGTTTGCTTTTCTGTGGCTGTGATAAACCATTCTGATTAAAGT
GAACTTGGGGAAGATAAGGTTTATTTGGCTTACACTTCAGGTCGTGATCC
TTTATGGAAGGAAGTCAGGGCAGGAACTCAAGATAGGAATTTGGAGTTCC
GGAGTCAGGAACCATGGAATAGTGGTGCTTACTGACTGTTTCCGGCTCCT
GCTTAGCTACTGTATATAGTTTACACACGCGCGCGCGCGGGCGCGCACAC
ACACACACACACACACCCCCACAGATTAGGATTCCTACATATACTTGCCT
GCTGCTTTCTGAAGCCACACTCGGTATAATAAAATTAAGCTTAATAGCAA
ATACACAGGACCAGGAAGACATGAAATAGTATGACAGTACTAAGAACTAC
ATATATATTTATATATAGCTTTTTATTTCAGGCTCACCTGCCTAAGAACG
GTGCCACTTACAGTCGGCCTAAACCCTCCCCTATGATTTCTCCTAGGAAG
AAAACCCTCTTTTCGGCTTCAAAGGTTTAAAAAGCGTCTGAATTGTTGCT
CCCAGAAGCACCTGCAGATTTTCTTTCTTTCCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_a03.b1 MSMg01no325_a03.b1 CHROMAT_FILE:
MSMg01no325_a03.b1 PHD_FILE: MSMg01no325_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:28 2005
         (349 letters)



>mm_chr19_7747203_7747951
          Length = 749

 Score =  667 bits (345), Expect = 0.0
 Identities = 348/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagaaagatgaaaaaatatatatcattcagcatatcgtggtccagaattatacctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aggagaaagatgaaaaaatatatatcattcagcatatcgtggtccagaattatacctata 490

                                                                       
Query: 61  tgttagcaagatttttccatataagtcactgtataaataatgagttaaattaaaattata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgttagcaagatttttccatataagtcactgtataaataatgagttaaattaaaattata 430

                                                                       
Query: 121 ctagtttgtcatgtataaaataactataataaagaaatttgaataaaatcacaatatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ctagtttgtcatgtataaaataactataataaagaaatttgaataaaatcacaatatatt 370

                                                                       
Query: 181 gaagaaacattaactcaaaaattttattgtcagtgatactggtcaagtttcagtatacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaagaaacattaactcaaaaattttattgtcagtgatactggtcaagtttcagtatacag 310

                                                                       
Query: 241 cacatgtttgtgatgtatggcagctcaatggaattgaaatcttccaagtcttagagcagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cacatgtttgtgatgtatggcagctcaatggaattgaaatcttccaagtcttagagcagg 250

                                                            
Query: 301 gagcagggtacagggagacttcatgagactcagaaggtaaacaaaactt 349
           ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 249 gagcagggtacagggagacttcatgagactcagtaggtaaacaaaactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)