BAC Information

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BAC

Clone NameMSMg01-325A19
Chromosome19 (Build37)
Map Location 57,500,102 - 57,500,322
singlet/doubletsinglet
Overlap genenone
Upstream geneCasp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1, EG668259, AI450540
Downstream geneTrub1, LOC100043038, Atrnl1, Gfra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325A19.T7 (MSMg01no325_a19.b1)MSMg01-325A19.TJ (MSMg01no325_a19.g1)
ACCAG443035AG443036
length713713
length of high quality
(start - end)
252 (44 - 295)633 (73 - 705)
definitionCHROMAT_FILE: MSMg01no325_a19.b1 PHD_FILE: MSMg01no325_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:31 2005CHROMAT_FILE: MSMg01no325_a19.g1 PHD_FILE: MSMg01no325_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGA
ATTCACTTACAGTTCACTCTGAGATTAACTTCATTCCCGAGGCTGAAAGG
CCAGTGACATGGTCATGTTAAAAGATTAAAAGTGTCCCCTCATCCCAAAG
AGAGAAAGTGGTACAGAGAAAAGGGAGGCGGAGATGCCAGACTGGAAGTC
GCCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAA
AGGGTTTCTCTGGGTAGCCCTGGCTGGCCTGGAACTCACTTTGTAAAACA
GGGTGGCCTCGAACTCAGAAATCCTCCTGGCTCTGGCTTCCGAGTGGTGG
GATAAAAGGGGAGCGCCACCACGCCCAGCCGGAAGTCGCCATCTTATGCT
CAGTAGTCATGGGAGACCACCCCCAAAGGCCTTACGGAAATGGAAGGGGC
GCAGTGAGGGATCCGCAGTGAGGGATCCCGGAGCGACCAGCAGGGGCAGG
ACTGAAGGCTGACAGGGAAGGGGCGATTTTCCTCAGGGCTGGTTCTGACA
GCACCTGGCCACCCTCCTCTTCACAAAGAACAGCAGCAAAACCCGACATG
AGGACAGTGATTTCTTCTGCACATGTATGTGTGGTGCCTGCATGTGAAAT
ACATGTCTTCATGTATGCTGACACGCGTGTGCATGTGTGCCAGCGTGTGT
GTGGAAGTCAAAG
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAGCCCAGAACCTACATAAAAGGCTTG
GTATCCTGGTGTGAGTTCCAGAAATGGGGAGAAGACAGAGGGTCCCTGGG
GCAAGCTCCAGATCCCGTGAGAGACCCTGTCTTTAAAAAAGGAGGGAGGG
TATAGTAAGTGAGGAAGACACCCAGTACTGACCTATGACCTCTGCATGCA
CACCTACTCTACACACGGACACACACACACACACAGTATGCTCAGTCAGA
ATGCTTGCTTCTGCTTTCAAGACTATAAACAGAATTTTAACGTTAGCAAT
GTTTTCTTTGGTGCATTAGTCTGTTTCTGTTGATAAAACAAAATACCTAA
GGCTGGTCCTTTATTTTAAAGCGCGGTTTATTTCGCTCACAGCTTTGAGG
GCTGCAAGTTCAAGCTTGAGTGAACCCAAGGCCATCTGTTCGGCCTCTGG
TGAGGACTCTGTGGCAGATGGCAGGACAGGAAGCCAGAGAGTTCTGGGAG
CCATGCCTTCCTGTTATGTAACCTACCTTCAAAAAGCAGGGTCTTGTTGT
GCTGGCCTATAATTCACTATGTCAAAGTGGCTGGCCCCGGAACTCACAGA
GATCCTCCTGCCTCTTACTCCTGAGTTCTGGGATTCAAGGTGTTCTCCCG
TCATGTCCATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_a19.b1 MSMg01no325_a19.b1 CHROMAT_FILE:
MSMg01no325_a19.b1 PHD_FILE: MSMg01no325_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:31 2005
         (252 letters)



>mm_chr19_57499960_57500611
          Length = 652

 Score =  325 bits (168), Expect = 2e-93
 Identities = 215/248 (86%), Gaps = 27/248 (10%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcacttacagttcactctgagattaacttcattcccgaggctgaaaggccagtga 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggaattcacttacagttcaatctgagattaacttcattcccgaggctgaaaggccagtga 304

                                                                       
Query: 65  catggtcatgttaaaagattaaaagtgtcccctcatcccaaagagagaaagtggtacaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 303 catggtcatgttaaaagattaaaagtgtcccctcatcccaaagagaggaagtggtacaga 244

                                                                       
Query: 125 gaaaagggaggcggagatgccagactggaagtcgccatcttttttttttttttttttttt 184
           |||||||||||||||||||||||||||||||||||||||                     
Sbjct: 243 gaaaagggaggcggagatgccagactggaagtcgccatc--------------------- 205

                                                                       
Query: 185 ttttttttttttttttttgagaaagggtttctctgggtagccctggctggcctggaactc 244
                 |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||
Sbjct: 204 ------ttttttttttttgagatagggtttctctgtgtagccctggctgtcctggaactc 151

                   
Query: 245 actttgta 252
           ||| ||||
Sbjct: 150 actctgta 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)